PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc015273.1_g010.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family HD-ZIP
Protein Properties Length: 743aa    MW: 80337.4 Da    PI: 5.9272
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc015273.1_g010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.92.3e-2057113157
                            TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
               Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                            r+k +++t++q++eLe+ F+ n++p+++er  L kkl+L+ +qVk+WFqNrR+++k+
  Cse_sc015273.1_g010.1  57 RQKYHRHTPYQIQELEASFKDNPHPDEKERLALGKKLNLENKQVKFWFQNRRTQMKQ 113
                            678899************************************************996 PP
2START154.49.5e-492624792206
                            HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S... CS
                  START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla... 77 
                            la  a++el+k+ +a++p+W        e ++ de+l++f+   +     + +ea+rasg+v  ++  lve lld + +W e++    
  Cse_sc015273.1_g010.1 262 LAINAMDELMKLGQANSPLWIGNMegggEVLDLDEYLRTFPLCLGmkppgYVSEASRASGIVMINSLALVEGLLDAN-RWREMFLgli 348
                            78899****************999899999**********7655599999***************************.********** PP

                            .EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEE CS
                  START  78 .kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepk 157
                             + +tlevis g      g++qlm+ae q+ splvp R   f+R++rq+ +g+w+ivd Svds ++         +++lpSg++++++
  Cse_sc015273.1_g010.1 349 gSSSTLEVISGGtadsrnGVVQLMQAEIQLVSPLVPvRQARFIRFCRQHAEGVWAIVDLSVDSGREGFL------SRRLPSGCIVHDM 430
                            ******************************************************************986......668********** PP

                            CTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                  START 158 snghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                            +ng sk+tw+eh++++++++h+ +r+l++sgl +ga++w +tlqr+ce+
  Cse_sc015273.1_g010.1 431 PNGFSKITWIEHTEYDENVVHNQYRPLLRSGLGFGAQKWISTLQRHCEC 479
                            ***********************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 743 aa     Download sequence    
MEGLGEMGLI GENFEGNLGR VRGDGSESRS GGSDNLEGAS GDEQDIPVGP SSSSRRRQKY  60
HRHTPYQIQE LEASFKDNPH PDEKERLALG KKLNLENKQV KFWFQNRRTQ MKQENDKLRI  120
ENIAMKEAIR APVCNNCGGQ AILGDISIDE HHLRIENARL RDELSRISIL ANKFLGRPLS  180
SFSGSMPHGM SSSNLELAVG RNGYGGLNPM DLGLPMGLDY NNGMSSALPL MSPSRPGIGM  240
TIGGGGGGGM DMPYEKNMLL ELAINAMDEL MKLGQANSPL WIGNMEGGGE VLDLDEYLRT  300
FPLCLGMKPP GYVSEASRAS GIVMINSLAL VEGLLDANRW REMFLGLIGS SSTLEVISGG  360
TADSRNGVVQ LMQAEIQLVS PLVPVRQARF IRFCRQHAEG VWAIVDLSVD SGREGFLSRR  420
LPSGCIVHDM PNGFSKITWI EHTEYDENVV HNQYRPLLRS GLGFGAQKWI STLQRHCECV  480
ATIMSPDASI DDSPGGRRSL TSLAQRMTAN FCAGVCATGG HKWEVIGNAA ETAKIMIRKS  540
LNNPGEPSGA VLSATMSVWM PMPHQRLFAL MLNEELRSQW DVLSPGSAMQ NMIRFSKGQD  600
PGNPNTISLL RANTAGGNAN QNSMLVLQES TTDVTGSLIV YAAVDVQSIQ VVMNGGDSSC  660
VTMLPSGFAI VPDCVAESGA PVAKAGSEGG SLLTVGFQIL VNDLPSSKLT IESINTIISL  720
ISRTVQGIKE VVHSNQQGRQ IDQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein