PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc015200.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

TCP

Protein Properties

Length: 384aa MW: 43585.7 Da PI: 8.8244

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc015200.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	129.5	3.3e-40	82	216	2	134
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.ssssasec..eaesssssasnss 86 agkkdrhskihT++g+RdRR+Rls+++a++fFdLqd LGfdk+s tieWL+ ++++ai e ++ ++++ +++ e+ +s ++++++ Cse_sc015200.1_g020.1 82 AGKKDRHSKIHTAQGLRDRRMRLSLHIARKFFDLQDLLGFDKASSTIEWLFCKSNKAITEVAKKiNTQKTNQTtsEEIQSATKTATNK 169 89************************************************************633333344222222222222222 PP TCP 87 sgkaaksaakskksqksaasalnlakesrakarararertrekmrikn 134 +++ ++++ +++++ ++ ++++ k++r +ararar+rtr++m+ik+ Cse_sc015200.1_g020.1 170 ADNTKEED-TKNNELRRRIQTNSSVKDTRDQARARARDRTRKRMMIKE 216 22222222.333333333335788899****************995 PP

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence
MEHVCSSRKD ECLYIDPYTE DGHEEEPPLF SDFPSPFFDD ITTMPILENN HIHQQHLNSR 60 KEPLNIVEPS PSESKHLKKR SAGKKDRHSK IHTAQGLRDR RMRLSLHIAR KFFDLQDLLG 120 FDKASSTIEW LFCKSNKAIT EVAKKINTQK TNQTTSEEIQ SATKTATNKA DNTKEEDTKN 180 NELRRRIQTN SSVKDTRDQA RARARDRTRK RMMIKELEKS KQLFRGNPKN EINKLGLGYL 240 TSPNNHNLLE LGYTSSAPEP ILRESSSPSI EHSSTYHLLQ ELQSRSIDVN SYESYSGSIV 300 GTSTDWSTLF SNGNPPAGWL NSCNGIIAMP EGWETNSFIT ESTSPLTAGD NYEQSPSSVF 360 MPTTTNILSL KTKARKQIFP AVKH

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence

MEHVCSSRKD ECLYIDPYTE DGHEEEPPLF SDFPSPFFDD ITTMPILENN HIHQQHLNSR  60
KEPLNIVEPS PSESKHLKKR SAGKKDRHSK IHTAQGLRDR RMRLSLHIAR KFFDLQDLLG  120
FDKASSTIEW LFCKSNKAIT EVAKKINTQK TNQTTSEEIQ SATKTATNKA DNTKEEDTKN  180
NELRRRIQTN SSVKDTRDQA RARARDRTRK RMMIKELEKS KQLFRGNPKN EINKLGLGYL  240
TSPNNHNLLE LGYTSSAPEP ILRESSSPSI EHSSTYHLLQ ELQSRSIDVN SYESYSGSIV  300
GTSTDWSTLF SNGNPPAGWL NSCNGIIAMP EGWETNSFIT ESTSPLTAGD NYEQSPSSVF  360
MPTTTNILSL KTKARKQIFP AVKH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	201	211	RARARDRTRKR
2	204	212	ARDRTRKRM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67260.2	2e-26	TCP family protein