PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc014224.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

Nin-like

Protein Properties

Length: 634aa MW: 72741.2 Da PI: 6.433

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc014224.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	22.2	2.8e-07	467	498	4	35
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKri 35 e+s ed+++++ +++k+AA eLgv+l++LKr+ Cse_sc014224.1_g010.1 467 ELSREDIEQHYGKTMKKAAEELGVSLSTLKRK 498 7999**************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 634 aa Download sequence
MVDNLDQKDP SGFLESFPTY RLHSKPRSCS EVLWVFSSKD ERYENNSYSP DDAGTWTMIN 60 DKIKSAFSKM NLGFHIIAQF WAPVTIGGKH LLSTSGQPFA VSYLHKDLIK YRRLRVEHVY 120 DIDVNSNNSK FRGTPASAFL NRFAEIATMN TSVYQEAVPL LHYSFLIPIY RPYQTSSSSD 180 CIGVIECSSW LIERLFLLNV MSMAIKEVGL GVYNVQDRIP YKTMKGLKLV RDEIQEALKI 240 VCESHNIGVA QAWISYEDEY HVPFSFSSED TQTTRRLALK LTGYNEYYEY STASSLRFNE 300 YYEACDMVPL QMGEGLVEKT LQDYQPRFCE NISQLGYDTL IGSVSTEYRA CSGFTICTSI 360 DTGDYNCAFE FVWHHNPNYV LLLEALLLTL KRCLPHFNFA SGAELGDQLH VIDVDNSTKS 420 ETKFFKIFNE KRLSSIPKEI DNGKKAMVIN YNAHARSKEK RDTTEIELSR EDIEQHYGKT 480 MKKAAEELGV SLSTLKRKHN ILGMSGLQGP DLLQRKAYKS NKYQSKESHT HEKDNGVIQD 540 SSPVKRNENT DIKAEYEDDI IKIHLGNSEA TFVTVENEIG KKFKLKHGTF KIKYRDEDEE 600 WILMTSDEDL SDCIQNSRNV DRSAVRLRVL LHNQ

Sequence ? help Back to Top

Protein Sequence Length: 634 aa Download sequence

MVDNLDQKDP SGFLESFPTY RLHSKPRSCS EVLWVFSSKD ERYENNSYSP DDAGTWTMIN  60
DKIKSAFSKM NLGFHIIAQF WAPVTIGGKH LLSTSGQPFA VSYLHKDLIK YRRLRVEHVY  120
DIDVNSNNSK FRGTPASAFL NRFAEIATMN TSVYQEAVPL LHYSFLIPIY RPYQTSSSSD  180
CIGVIECSSW LIERLFLLNV MSMAIKEVGL GVYNVQDRIP YKTMKGLKLV RDEIQEALKI  240
VCESHNIGVA QAWISYEDEY HVPFSFSSED TQTTRRLALK LTGYNEYYEY STASSLRFNE  300
YYEACDMVPL QMGEGLVEKT LQDYQPRFCE NISQLGYDTL IGSVSTEYRA CSGFTICTSI  360
DTGDYNCAFE FVWHHNPNYV LLLEALLLTL KRCLPHFNFA SGAELGDQLH VIDVDNSTKS  420
ETKFFKIFNE KRLSSIPKEI DNGKKAMVIN YNAHARSKEK RDTTEIELSR EDIEQHYGKT  480
MKKAAEELGV SLSTLKRKHN ILGMSGLQGP DLLQRKAYKS NKYQSKESHT HEKDNGVIQD  540
SSPVKRNENT DIKAEYEDDI IKIHLGNSEA TFVTVENEIG KKFKLKHGTF KIKYRDEDEE  600
WILMTSDEDL SDCIQNSRNV DRSAVRLRVL LHNQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	389	393	TLKRC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	1e-17	Nin-like family protein