PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cse_sc014053.1_g020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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Family | LBD | ||||||||
Protein Properties | Length: 157aa MW: 17029.2 Da PI: 5.7374 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 34.9 | 4.2e-11 | 2 | 45 | 1 | 39 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGa 39 +C++C+vlr++C++ C+l+p++ p++q +++ +++k+FG Cse_sc014053.1_g020.1 2 SCNGCRVLRKGCSDTCILRPCLqwidtPEAQGHATVFLAKFFGL 45 6******************************************6 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence |
MSCNGCRVLR KGCSDTCILR PCLQWIDTPE AQGHATVFLA KFFGLNPVNG AVGLLWTGNW 60 HVCQASVDTV LRGGTLRPIP ELMDGSPAVM PKLNNSSQNS LANVQDSVKY PRSRVVKRGR 120 AADLDLNENS EESSVTTTCL DLDYSEEGRD ITGTGFP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49940.1 | 1e-47 | LBD family protein |