PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc013892.1_g030.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

C2H2

Protein Properties

Length: 430aa MW: 47595.4 Da PI: 8.2725

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc013892.1_g030.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11	0.0014	334	356	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C k+Fs+ L H r+H Cse_sc013892.1_g030.1 334 HECPLCFKVFSSGQALGGHKRSH 356 78******************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence
LRKDPKKTPK VKDTSEVSNC LVVLDKLCKE CGKGFQSWKA LFGHMKCHSD KVSTNNNTLN 60 QDSWATSHSD NENSKSGTKK VGRIKKSRSR NPRVKRYIVT STTVTTTTIT TASSSISMNA 120 NNINTNNNQI NSTHASPSVV SDIEQDQESE VALCLMMLSR DEGKWGHEIE SHDNCNSSAF 180 VKLTKVEGKK PVENGSKSKK FVEPKVGAEY LGRSEVGSIG LEKTVNQNDE FDDESELGFG 240 KFEDLSKRKF DCFTCNKSFD SYQALGGHKA SHKKLKGSLD SKMEGENTIE NKPFLDHELT 300 INGFFPKPSD HQQTTKSFNL GAGSAKKTVV LGSHECPLCF KVFSSGQALG GHKRSHMVAE 360 AKLNQQTSLN LIEKVNEPVR EIRGFLDLNM LPDTMEDDMI LNSSSTGYKS WHWADTPNQE 420 PTTLLGLLSS

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence

LRKDPKKTPK VKDTSEVSNC LVVLDKLCKE CGKGFQSWKA LFGHMKCHSD KVSTNNNTLN  60
QDSWATSHSD NENSKSGTKK VGRIKKSRSR NPRVKRYIVT STTVTTTTIT TASSSISMNA  120
NNINTNNNQI NSTHASPSVV SDIEQDQESE VALCLMMLSR DEGKWGHEIE SHDNCNSSAF  180
VKLTKVEGKK PVENGSKSKK FVEPKVGAEY LGRSEVGSIG LEKTVNQNDE FDDESELGFG  240
KFEDLSKRKF DCFTCNKSFD SYQALGGHKA SHKKLKGSLD SKMEGENTIE NKPFLDHELT  300
INGFFPKPSD HQQTTKSFNL GAGSAKKTVV LGSHECPLCF KVFSSGQALG GHKRSHMVAE  360
AKLNQQTSLN LIEKVNEPVR EIRGFLDLNM LPDTMEDDMI LNSSSTGYKS WHWADTPNQE  420
PTTLLGLLSS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	85	95	KKSRSRNPRVK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60580.1	5e-21	C2H2 family protein