PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc013848.1_g020.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family MYB
Protein Properties Length: 325aa    MW: 36938.5 Da    PI: 5.8023
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc013848.1_g020.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.41.2e-161663148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           rg+W++ Ed +lv  ++++G ++W++ ++  g+ R++k+c++rw +yl
  Cse_sc013848.1_g020.1 16 RGPWSPSEDIKLVAFIQKHGHPNWRSLPKQAGLLRCGKSCRLRWINYL 63
                           89******************************99************97 PP
2Myb_DNA-binding52.98.4e-1769114148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            rg++T++E++ ++++++ +G++ W++Ia++++ gRt++++k+ w++yl
  Cse_sc013848.1_g020.1  69 RGNFTPQEEQSIIRLHATFGNK-WSKIASHLP-GRTDNEIKNVWNTYL 114
                            89********************.*********.*************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    
MGGGRLPCCD KSKVKRGPWS PSEDIKLVAF IQKHGHPNWR SLPKQAGLLR CGKSCRLRWI  60
NYLRPGLKRG NFTPQEEQSI IRLHATFGNK WSKIASHLPG RTDNEIKNVW NTYLKKRSLQ  120
RLSMANINTT DDTPNSSSCN ISNSDQNIHN NEEPANQEIS SSHDQQLTAV VEYPKVIEAA  180
AIGPISVDDM VDDIIQKPLA PSTSTLSSII NDVDIRFPDN LVSYSEDELW NMVESPQPIN  240
LWKSGHEMME GVEYWVRLLE DELGLDHEKD SITNITTAGP CQQVDQNHYQ TMAKMDQEEA  300
EKWCKISDQI SPSWPTTFPH TFDLW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79180.12e-72MYB family protein