PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cse_sc012846.1_g020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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Family | LBD | ||||||||
Protein Properties | Length: 239aa MW: 26433 Da PI: 7.1761 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 75.4 | 1e-23 | 4 | 108 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeere.damsslvyeAearardPvyGavgvilk 82 +C++C+vlr++C +dC+l+p++ p++q++++ +++k++G+ +l+l++a p++ r+ +++ ++ A+ r+ +P yG+vg+i++ Cse_sc012846.1_g020.1 4 SCNGCRVLRKGCDEDCILRPCLtwitsPESQANATLFLAKFYGRVGLLNLINAGPHHLRPgTTILHIIRSACGRIINPAYGSVGLIWS 91 6*********************************************************85267889********************** PP DUF260 83 lqqqleqlkaelallke 99 ++++ +q++++ +l+++ Cse_sc012846.1_g020.1 92 GNWEQCQAAVDSVLQGS 108 *********99888765 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence |
MTMSCNGCRV LRKGCDEDCI LRPCLTWITS PESQANATLF LAKFYGRVGL LNLINAGPHH 60 LRPGTTILHI IRSACGRIIN PAYGSVGLIW SGNWEQCQAA VDSVLQGSTI MQLPSSNNHD 120 VSQQSSIMPI EGCDIRHLSK DPNDDHRVKT LKKFKKPRCE FGSRQVVSTS VVGTEESTKC 180 KVPERKREEL EVNQAPNHVP ALCAEINLLD NVDGVALLER DDRQIHCDES GKSNYHADS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 9e-62 | LBD family protein |