PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc012755.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

HD-ZIP

Protein Properties

Length: 312aa MW: 35600.5 Da PI: 6.2344

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc012755.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.3	1.1e-17	89	142	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa++k Cse_sc012755.1_g010.1 89 KKRRLNMEQVKTLERNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 142 456899***********************************************9 PP
2	HD-ZIP_I/II	132.4	1.7e-42	88	180	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 ekkrrl+ eqvk+LE++Fe +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdy+aLkr++da+k+en++L++++++L+ Cse_sc012755.1_g010.1 88 EKKRRLNMEQVKTLERNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDALKRQFDAVKAENDSLQSQNHKLH 175 69************************************************************************************** PP HD-ZIP_I/II 89 eelke 93 +e+++ Cse_sc012755.1_g010.1 176 AEIMA 180 99975 PP

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence
MTCTGMAFFS NNFMLQSSQE DDHHAPTSLS PILQPCTTTQ DFSGVASFLG KRSMSYSGMN 60 NIDGCDQEGN MNGEDELSDD GSQLLAGEKK RRLNMEQVKT LERNFELGNK LEPERKMQLA 120 RALGLQPRQI AIWFQNRRAR WKTKQLEKDY DALKRQFDAV KAENDSLQSQ NHKLHAEIMA 180 LKNREPTELI NLNVKETEGS SSNRSENSSE IKLDISRTPP NDSPLSSHHQ HQHHQQPIPN 240 LFPSSNIDRP NTNNIVAHQL FHNSSSRPAD HQLQCQKLDQ SSTIKEECFS SMFVGMEDQS 300 GFWPWLEQPQ FN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	137	145	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69780.1	1e-107	HD-ZIP family protein