PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc012728.1_g010.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family GRAS
Protein Properties Length: 581aa    MW: 65980.4 Da    PI: 7.4145
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc012728.1_g010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS74.22.4e-232303292104
                   GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                            + lL++cA+av+s+++ +++++L++++ ++sp+gd+ +Rla+yf++AL+ar ++++  ly+ l++s+ +   ss+ ++a+++++ ++P
  Cse_sc012728.1_g010.1 230 RILLTQCAQAVASNNKYEVEKFLKKIRSHSSPRGDSDERLAHYFANALEARFQGTGMDLYANLASSKIN---SSDIVKAYQVYVSTCP 314
                            568*********************************************************999999998...9*************** PP

                   GRAS  90 ilkfshltaNqaIle 104
                            + k+s++ aN++I +
  Cse_sc012728.1_g010.1 315 FKKMSNIYANKMIGN 329
                            ************965 PP
2GRAS218.72.9e-67330579128374
                   GRAS 128 LlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrl 213
                            L + L++Rp+gppsl+iTg++ p++g   +e++eetg+rLa+++++++vpfe+ + +ak+++++++++L+++++E l+ n+ ++l ++
  Cse_sc012728.1_g010.1 330 LARGLSARPGGPPSLKITGIDFPQPGfrPAERVEETGRRLADYCKRFNVPFEYYA-IAKQWDTVTMDDLKIDKDEILVANCLYRLRNV 416
                            56789********************9*****************************.7******************************* PP

                   GRAS 214 ldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvva 299
                            +de+v  +   +r++vLkl+k+++P+++++   + ++n++ Fl+rf ea   +s+lfd++ea l+re+eer   E+e++gre+ nv+a
  Cse_sc012728.1_g010.1 417 PDETVLGAIdcPRESVLKLIKTIKPDLFIHGVVNGNYNAPFFLTRFREAYFNFSVLFDMFEAALHREDEERLLFEKEVIGREVINVIA 504
                            ***986555569**************************************************************************** PP

                   GRAS 300 cegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                            ceg++r+er et+++W++r e+aGF +vp++++++k++k+ ++    + ++v+++ +++v+gWk+r ++++S+W+
  Cse_sc012728.1_g010.1 505 CEGTKRIERPETYKQWQARNERAGFAAVPMNKDIMKEVKAKVKIGFHNDFMVDNDGDWMVQGWKGRVIYAISSWK 579
                            *****************************************99766677*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 581 aa     Download sequence    
MNTLIQLHCP TPVESMLKTI VSPTSRQLES PQVVYNQTLH KQNVQKGWCS CGCTECDDPT  60
IPHDYFEAVL DYIKDMLMGE EDDLMNKSSM YHDCSALQAT EKSFYDVLAQ KQVNFPSSIN  120
ALDLNFSKTQ RSESQFGSLR GKKNRQPLEC GGFEEHGRSN KQLAGGLGEE TMEGDIVTMI  180
DKLLLCPGSK HVGLHDELAC CPFDNPTNPV NNGKQRRKRN DAKKEIVDLR ILLTQCAQAV  240
ASNNKYEVEK FLKKIRSHSS PRGDSDERLA HYFANALEAR FQGTGMDLYA NLASSKINSS  300
DIVKAYQVYV STCPFKKMSN IYANKMIGNL ARGLSARPGG PPSLKITGID FPQPGFRPAE  360
RVEETGRRLA DYCKRFNVPF EYYAIAKQWD TVTMDDLKID KDEILVANCL YRLRNVPDET  420
VLGAIDCPRE SVLKLIKTIK PDLFIHGVVN GNYNAPFFLT RFREAYFNFS VLFDMFEAAL  480
HREDEERLLF EKEVIGREVI NVIACEGTKR IERPETYKQW QARNERAGFA AVPMNKDIMK  540
EVKAKVKIGF HNDFMVDNDG DWMVQGWKGR VIYAISSWKI V
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-151GRAS family protein