PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc012692.1_g040.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

GRAS

Protein Properties

Length: 434aa MW: 48233.6 Da PI: 6.6693

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc012692.1_g040.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	54	3.4e-17	280	346	1	67
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalpps 67 l++lL cA+av+++d+++a+ lL++++e+as +gd mqRla+yf +L+ar+a+s+ e+yka+ ++ Cse_sc012692.1_g040.1 280 LRKLLSLCAQAVAANDQRCANDLLKQIREHASLSGDGMQRLAHYFSAGLEARMAGSGAEIYKACLSK 346 689999*******************************************************997655 PP
2	GRAS	65.2	1.3e-20	350	430	105	187
GRAS 105 avegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrle 187 av+ ++++Hi+Df+i +G+QW+++lq L++R++gpp+lRi g++ p +g ++++eetg+r ++Ae++ vpf+f + a+++e Cse_sc012692.1_g040.1 350 AVDDKKKLHIVDFGILYGFQWACFLQRLSKRSGGPPELRIMGIDFPFPGfkPAQRVEETGRR--NYAETFIVPFKFAI--AQKWE 430 89999**************************************999999******8..9*********97..56665 PP

Sequence ? help Back to Top
Protein Sequence Length: 434 aa Download sequence
MIITDQNHHH KHCHDNQVLH HDIKGSDLLL DKNGILKIAD FGFASFVDLI HEQPMTNRIV 60 TFWYRAPELL VRATEYGVGV NLWSAGCILA GLLANKHILA GHTEADQLQK IYALCGSPSD 120 EYWKTYKLPL ETLYKPASVT KPLLEGNDYM NIDDDGKNQN DVHYGNDYPD DDCNPAPEIE 180 MDQGWEGDFG DYSCFGNGDG FGTGTGLSCV VGDNESFLVP TVPVSLESQS RYQSSYWSSA 240 EKTTLPHGNF VPNGAARVQQ KSNVSKGRGK RGVKKNVLDL RKLLSLCAQA VAANDQRCAN 300 DLLKQIREHA SLSGDGMQRL AHYFSAGLEA RMAGSGAEIY KACLSKPIAA VDDKKKLHIV 360 DFGILYGFQW ACFLQRLSKR SGGPPELRIM GIDFPFPGFK PAQRVEETGR RNYAETFIVP 420 FKFAIAQKWE TIIL

Sequence ? help Back to Top

Protein Sequence Length: 434 aa Download sequence

MIITDQNHHH KHCHDNQVLH HDIKGSDLLL DKNGILKIAD FGFASFVDLI HEQPMTNRIV  60
TFWYRAPELL VRATEYGVGV NLWSAGCILA GLLANKHILA GHTEADQLQK IYALCGSPSD  120
EYWKTYKLPL ETLYKPASVT KPLLEGNDYM NIDDDGKNQN DVHYGNDYPD DDCNPAPEIE  180
MDQGWEGDFG DYSCFGNGDG FGTGTGLSCV VGDNESFLVP TVPVSLESQS RYQSSYWSSA  240
EKTTLPHGNF VPNGAARVQQ KSNVSKGRGK RGVKKNVLDL RKLLSLCAQA VAANDQRCAN  300
DLLKQIREHA SLSGDGMQRL AHYFSAGLEA RMAGSGAEIY KACLSKPIAA VDDKKKLHIV  360
DFGILYGFQW ACFLQRLSKR SGGPPELRIM GIDFPFPGFK PAQRVEETGR RNYAETFIVP  420
FKFAIAQKWE TIIL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	8e-50	GRAS family protein