PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc012576.1_g010.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family HD-ZIP
Protein Properties Length: 745aa    MW: 82800.5 Da    PI: 5.8778
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc012576.1_g010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.13.6e-1962117156
                            TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
               Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                            +++ +++t++q++e+e++F+++++p+ ++r+eL ++l+L+  qVk+WFqN+R+++k
  Cse_sc012576.1_g010.1  62 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELGRRLSLEPLQVKFWFQNKRTQMK 117
                            688999***********************************************998 PP
2START201.82.8e-632514721206
                            HHHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S. CS
                  START   1 elaeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla. 77 
                            ela +a++el+++a+ +ep+Wv s+     es+n+de++++f+++ +      ++ea+r s vv+m++++lve+l+d++ qW+  +  
  Cse_sc012576.1_g010.1 251 ELAVTAMEELIRMAQIGEPLWVPSPddpahESLNEDEYIRSFPRGIGprptgLKSEASRNSNVVIMNHMNLVEILMDVN-QWSSVFCg 337
                            57899***************************************999********************************.******99 PP

                            ...EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEE CS
                  START  78 ...kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgilie 155
                               +a+t+ev+s+g      galqlm+ae+q++splvp R+  fvRy++q+g+g wv+vdvS+ds ++ +    + R +++pSg+li+
  Cse_sc012576.1_g010.1 338 ivsRAMTTEVLSTGvagnynGALQLMTAEYQVPSPLVPtRENCFVRYCKQHGEGMWVVVDVSLDSVRSSS----IPRYRRRPSGCLIQ 421
                            999***************************************************************9976....677777******** PP

                            EECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                  START 156 pksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                            +++ng+s+vtw+eh++++   + +++++lv+sgla+gak+wvatl+rqce+
  Cse_sc012576.1_g010.1 422 EMPNGYSRVTWIEHIEVENGDVNNMYKVLVNSGLAFGAKRWVATLERQCER 472
                            *************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 745 aa     Download sequence    
MFQPNMFENL HHQQHLGDMG HKPPENHLDM LGDDEHDSKS GTDIMEGASG DDQDPNQHPN  60
KKKRYHRHTQ HQIQEMEAFF KECPHPDDKQ RKELGRRLSL EPLQVKFWFQ NKRTQMKAQH  120
ERYDNTQLRN ENDKLRAENI RYKEALANAV CPSCGGPPAI GEMSFDEQQL RVENLRLREE  180
IDRISGIAAK YVGKQAITFP DVSSHGPSHS LDLPVANFIP QQGMVGDMYG ASDLLRSMSG  240
TTEAEKPIII ELAVTAMEEL IRMAQIGEPL WVPSPDDPAH ESLNEDEYIR SFPRGIGPRP  300
TGLKSEASRN SNVVIMNHMN LVEILMDVNQ WSSVFCGIVS RAMTTEVLST GVAGNYNGAL  360
QLMTAEYQVP SPLVPTRENC FVRYCKQHGE GMWVVVDVSL DSVRSSSIPR YRRRPSGCLI  420
QEMPNGYSRV TWIEHIEVEN GDVNNMYKVL VNSGLAFGAK RWVATLERQC ERIASAMASN  480
IPSGDVGGNG EDDVRVMTRK SMDDPGRPPG IVLSAATSFW LPIPPKQVFN FLRDENSRSE  540
WDILSNCGHV QEMAHIANGR DPGNCVSLLR VNSANSSQSN MLILQETSSD ATGSYIIYAP  600
VDIASMNVVL SGGDPAYVAL LPSGFAILPD GQGRYEGEVG TTGGSLLTVA FQILVDSVPT  660
AKISLGSVAT VNTLIKCTVE RIKCAFGQWK RENNLAGDDF SLSSQRMKEV KNEPSKILDL  720
MGIVCQSDAT SGSHFHRFMG YRFGY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21750.20.0HD-ZIP family protein