PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc012477.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

Nin-like

Protein Properties

Length: 805aa MW: 90358 Da PI: 5.6802

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc012477.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	49.7	7.2e-16	554	599	2	47
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhR 47 e +i+ ++++k++ +p+ +AA +L v+ ++LKriCR +GI+RWP+ Cse_sc012477.1_g010.1 554 ERSIREQEIRKHYGKPMDEAAANLHVSRSTLKRICRSLGISRWPYK 599 678999**************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 805 aa Download sequence
MNGRDEFATS SRSNYLNSKY TCLFEPGARS DRNNNNNNGR RRRRRYLTSL KVYVNRDAED 60 EPLVSSFSKL LADQNIIDPQ IIKEKVTRAL SNLSFRDPRV LVQFWSPVTV RKRCLLTTLD 120 QPFGLGVVDE DLYLYRLESE QRMFVVDGEH REVGPPGRVY CQKLPEWSLV AHNLPTKQCS 180 NHGYINLPVF EPDSGCCVGV IEIITSSTYV DYAFEVHEVS RALKEENLKS PDMFENPSLY 240 IQIENARRPS ELEEIFLALK SICDIQNIPL AQTWALSGFS SVVASSGNLE QSCSSFNRNC 300 IGKTCMSTYD LPFYVRDLSM WEFHEACREQ HLDKSQGVVG KSMSSCGLCF CEDITKLDED 360 VYPLGSHARV NRITSCLAIY MIGIESDVEY VMEFVLPPHH ANEADLQSLV LRIKQQIKNV 420 SSVKLGSLSS LQVIGGDPLN WNFESPPSPI TILPENEEVL PEPGNQQLLV ENELIDVNDV 480 PFSKDESEAA YVEHMEDDNL EIKLIDNAAA GTSQSVVPFL NVGIEDADIN EEKPERKNLD 540 DKSNKPKRKR KRAERSIREQ EIRKHYGKPM DEAAANLHVS RSTLKRICRS LGISRWPYKN 600 EKSDSVLKPN KTDVVIHASD RAATPVLGTS IEPLGATNLY VPVGLTEHRN QSFTLVRHKE 660 EQTNLPDGSA QPKTTFGDQS IKITSAANTV KDLPTKSTHK EYTENSSAAN TVKTLTIKAT 720 YKENTVKFPF SLSGGLVKLE ELVATRFQLS PGSFRLKYAD ADGDMISIAC DSDLMGSVGD 780 SRQPDHQTLI RLLVLPVAHQ NPDTN

Sequence ? help Back to Top

Protein Sequence Length: 805 aa Download sequence

MNGRDEFATS SRSNYLNSKY TCLFEPGARS DRNNNNNNGR RRRRRYLTSL KVYVNRDAED  60
EPLVSSFSKL LADQNIIDPQ IIKEKVTRAL SNLSFRDPRV LVQFWSPVTV RKRCLLTTLD  120
QPFGLGVVDE DLYLYRLESE QRMFVVDGEH REVGPPGRVY CQKLPEWSLV AHNLPTKQCS  180
NHGYINLPVF EPDSGCCVGV IEIITSSTYV DYAFEVHEVS RALKEENLKS PDMFENPSLY  240
IQIENARRPS ELEEIFLALK SICDIQNIPL AQTWALSGFS SVVASSGNLE QSCSSFNRNC  300
IGKTCMSTYD LPFYVRDLSM WEFHEACREQ HLDKSQGVVG KSMSSCGLCF CEDITKLDED  360
VYPLGSHARV NRITSCLAIY MIGIESDVEY VMEFVLPPHH ANEADLQSLV LRIKQQIKNV  420
SSVKLGSLSS LQVIGGDPLN WNFESPPSPI TILPENEEVL PEPGNQQLLV ENELIDVNDV  480
PFSKDESEAA YVEHMEDDNL EIKLIDNAAA GTSQSVVPFL NVGIEDADIN EEKPERKNLD  540
DKSNKPKRKR KRAERSIREQ EIRKHYGKPM DEAAANLHVS RSTLKRICRS LGISRWPYKN  600
EKSDSVLKPN KTDVVIHASD RAATPVLGTS IEPLGATNLY VPVGLTEHRN QSFTLVRHKE  660
EQTNLPDGSA QPKTTFGDQS IKITSAANTV KDLPTKSTHK EYTENSSAAN TVKTLTIKAT  720
YKENTVKFPF SLSGGLVKLE ELVATRFQLS PGSFRLKYAD ADGDMISIAC DSDLMGSVGD  780
SRQPDHQTLI RLLVLPVAHQ NPDTN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	40	45	RRRRRR
2	547	568	KRKRKRAERSIREQEIRKHYGK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	1e-96	Nin-like family protein