PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc012380.1_g020.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family HD-ZIP
Protein Properties Length: 850aa    MW: 93144.7 Da    PI: 6.5051
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc012380.1_g020.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.62.1e-182280357
                           --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
               Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                           k  ++t+eq+e+Le+l++ +++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Cse_sc012380.1_g020.1 22 KYVRYTPEQVEALERLYHDCPKPSSIRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 80
                           5679*****************************************************97 PP
2START169.52.2e-531753832205
                            HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT. CS
                  START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg. 88 
                            +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W ++++++++l+v+ ++ 
  Cse_sc012380.1_g020.1 175 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVSLEPT-RVAEILKDRPAWFRDCRAVDVLDVLPTAn 261
                            789*******************************************************.8888888888****************999 PP

                            .EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE CS
                  START  89 .galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvd 171
                             g+++l +++l+a+++l+  Rdf+ +Ry+   ++g++v++++S++++q+ p+    +++vRae+lpSg+li+p+++g+s +++v+h++
  Cse_sc012380.1_g020.1 262 gGTIELLYMQLYAPTTLATaRDFWLLRYTSVTEDGSLVVCERSLTNTQNGPSipaVPNFVRAEMLPSGYLIRPCEGGGSIIHIVDHMN 349
                            9**************************************************99999******************************** PP

                            --SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
                  START 172 lkgrlphwllrslvksglaegaktwvatlqrqce 205
                             ++++++++lr+l++s ++ ++kt++ +l+++++
  Cse_sc012380.1_g020.1 350 FEAWSVPEVLRPLYESPTVLAQKTTMMALRQLRQ 383
                            *****************************99876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 850 aa     Download sequence    
MMSMSCKDGG GKGANAILDN GKYVRYTPEQ VEALERLYHD CPKPSSIRRQ QLIRECPILS  60
NIEPKQIKVW FQNRRCREKQ RKEASRLQSV NRKLTAMNKL LMEENDRLQK QVSHLVYENG  120
CFRTHTQNVS HFVYQLVTVA TKDTSCESVV TSGQRRLTPT QHPPRDASPA GLLSIAEETL  180
TEFLSKATGT AVEWVQMPGM KPGPDSIGIV AISHGCTGVA ARACGLVSLE PTRVAEILKD  240
RPAWFRDCRA VDVLDVLPTA NGGTIELLYM QLYAPTTLAT ARDFWLLRYT SVTEDGSLVV  300
CERSLTNTQN GPSIPAVPNF VRAEMLPSGY LIRPCEGGGS IIHIVDHMNF EAWSVPEVLR  360
PLYESPTVLA QKTTMMALRQ LRQIAQEASQ PGTPNWGRRP AALRALSQRL SRGFNEAVNG  420
FTDEGWSMMG TDGMDDVTIL VNSSPEKLMG SNISFSNGYP SVSTAVMCAK ASMLLQNVPP  480
ALLLRFLREH RSEWADNNVD AYSASAIKLG PCSLPGSRAG NFGGQVILPL AHTIEHEELL  540
EVIKLEGVGN CPEDALMARD MFLLQVRLCS GMDESAVGMC SELIFAPIDA SFAEDAPLLP  600
SGFRIIPLES GKEASSPNRT LDLASALEVR GSGNKVSDRD VGSGTARSVM TIAFEFAFET  660
HMQENVAAMA RQYVRSIISS VQRVALALSP SPNGGFNSPL GTPEAHTLAR WTSNSYRCYL  720
GVELLKAAGE GSESILKSMW HHSDAIVCCS MKALPVFTFA NQAGLDMLET TLVALQDISL  780
EKILDENGRK GLCNEFPQIM QQGFACLQGG ICVSSMGRPV SYDRAVAWKV LNDEGNAHCI  840
CFMFINWSFV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein