PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc012286.1_g050.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family HD-ZIP
Protein Properties Length: 758aa    MW: 83865.1 Da    PI: 6.1257
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc012286.1_g050.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.52.6e-1961116156
                            TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
               Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                            +++ +++t++q++eLe++F+++++p+ ++r+eL ++l L+  qVk+WFqN+R+++k
  Cse_sc012286.1_g050.1  61 KKRYHRHTQHQIQELEAFFKECPHPDDKQRKELGRRLTLEPLQVKFWFQNKRTQMK 116
                            688999***********************************************998 PP
2START221.72.3e-692504701206
                            HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.. CS
                  START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla.. 77 
                            ela +a++elv++a+++ep+Wv ss    e +n+de+ q+f+++ +      ++ea+r+s+vv+m++ +lve+l+d++ qW++ +   
  Cse_sc012286.1_g050.1 250 ELAVAAMEELVRMAQSGEPLWVPSSdnssETLNEDEYSQTFPRGIGpkqmgLQSEASRESAVVIMNHINLVEILMDVN-QWSNVFSgi 336
                            57899********************999999************999********************************.********* PP

                            ..EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEE CS
                  START  78 ..kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliep 156
                              +a+tlev+s g      galq+m+ae+q++splvp R+++fvRy++q+ +g+w++vdvS+d+ ++      + R++++pSg+li++
  Cse_sc012286.1_g050.1 337 vsRAMTLEVLSIGvagnynGALQVMTAEYQVPSPLVPtREYYFVRYCKQHADGTWAVVDVSLDNLRPGV----MSRSRRRPSGCLIQE 420
                            *******************************************************************98....79************* PP

                            ECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                  START 157 ksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                            ++ng+skvtwvehv+ ++r +h ++rslv+sgla+ga++wvatl+rqce+
  Cse_sc012286.1_g050.1 421 LPNGYSKVTWVEHVEFDDRAVHDIYRSLVNSGLAFGAQRWVATLDRQCER 470
                            ************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 758 aa     Download sequence    
MFQPNMFESH HHHHLLDMSH KTPENELDML RDDDYESKSG TDIMEAPSGD DQDPSQRPNK  60
KKRYHRHTQH QIQELEAFFK ECPHPDDKQR KELGRRLTLE PLQVKFWFQN KRTQMKAQHE  120
RHENSSLRND NEKLRMENIR YKEALANATC PNCGGPAAIG EMSFDEQQLR MENARLRDEI  180
DRISGIAAKY VGKPLLTYPN LSQNGPPRSL DLPIASFSSQ PSMVDDMFGT SNLLRSVSGP  240
SEADKPVIIE LAVAAMEELV RMAQSGEPLW VPSSDNSSET LNEDEYSQTF PRGIGPKQMG  300
LQSEASRESA VVIMNHINLV EILMDVNQWS NVFSGIVSRA MTLEVLSIGV AGNYNGALQV  360
MTAEYQVPSP LVPTREYYFV RYCKQHADGT WAVVDVSLDN LRPGVMSRSR RRPSGCLIQE  420
LPNGYSKVTW VEHVEFDDRA VHDIYRSLVN SGLAFGAQRW VATLDRQCER LASAMANNIP  480
AGDVGGNLKF VNYVYSKSML YLSVIVIVML IWTVITTLEG RKSMLKLSER MVLSFCSGVG  540
ASTTHTWTTL SGSGADDVRV MTRKSVDDPG RPPGIVLSAA TSFWIPVPPK RVFDFLRDEN  600
SRSEWDILSN GGLVQEMAHI ANGRDPGNCV SLLRVNSANS SQGNMLILQE SSSDSTGSYV  660
IYAPVDIAAM NVVLNGGDPA YVALLPSGFA ILPDGAGKHQ GGRILEVGNG GSLLTVAFQI  720
LVDSVPTAKL SLGSVATVNN LIKCTVERIK AAVALENP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0HD-ZIP family protein