PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cse_sc011479.1_g020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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Family | SBP | ||||||||
Protein Properties | Length: 342aa MW: 38418.8 Da PI: 8.6756 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 128.4 | 2.7e-40 | 75 | 151 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC adls++++yhrrh+vCe+hsk+p v++ g+ qrfCqqCsrfh l efDe krsCr+rL++hn+rrrk+++ Cse_sc011479.1_g020.1 75 CLVDGCIADLSSCRDYHRRHRVCETHSKTPIVTIGGKDQRFCQQCSRFHPLGEFDEVKRSCRKRLDGHNRRRRKPRT 151 **************************************************************************875 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 342 aa Download sequence |
MDWIFKASSS WDFDEFDVMD DTSIIGNSQN LESFDVYQGS GIFGDGQKRS TMPSSPPGSS 60 KKPRRHASEQ QPASCLVDGC IADLSSCRDY HRRHRVCETH SKTPIVTIGG KDQRFCQQCS 120 RFHPLGEFDE VKRSCRKRLD GHNRRRRKPR TESMYLNYGS YLANHQGTKL LNFGGSPAYT 180 TTFGSSLTWP SEEKFNQKLH VAVEQTTPSN SYARVRERKF PFLLDTDSDQ VNHLFSEATF 240 QHTSASAHLL VEPKGALSLL SKNKIHHAHA SQSGPNNLIQ PPGTALQFNG SLNHHLNPHL 300 PLRNVTGSNS GHATDHLIKM IHFRADALLE NEAAKVLSFS WE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 132 | 149 | KRSCRKRLDGHNRRRRKP |
2 | 144 | 150 | RRRRKPR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50670.1 | 2e-46 | SBP family protein |