PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc011435.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

LBD

Protein Properties

Length: 344aa MW: 39646.2 Da PI: 4.7701

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc011435.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	131.7	3.1e-41	39	138	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 aCaaC+++rrkCa+dC+lapyfp++++++f+n+hklFG+sn++k++++l++ ++++am++++y++++ra+dPv G++++i++lq+q+e Cse_sc011435.1_g020.1 39 ACAACRYQRRKCAPDCILAPYFPHDRQRQFQNAHKLFGVSNITKIIRDLDPPQKDEAMRTIIYQSDVRAQDPVGGCYRIIRELQRQIE 126 7************************************************************************************* PP DUF260 89 qlkaelallkee 100 +++el+ + ++ Cse_sc011435.1_g020.1 127 LSRTELEFVLHQ 138 ****988776 PP

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence
MTNNFNHNKN INHRHHNHHH LSSSASTITT TRSNSTTQAC AACRYQRRKC APDCILAPYF 60 PHDRQRQFQN AHKLFGVSNI TKIIRDLDPP QKDEAMRTII YQSDVRAQDP VGGCYRIIRE 120 LQRQIELSRT ELEFVLHQLA VCRAHAMQNQ NQNQNHQLLI DDVAIDDPNL YDDPSTVLDN 180 TDNNNNDNDN YQHHGLDLDL GQMPQNEHEH DQFILGEDDL KDDCQDEHAL QLQEINSWAT 240 VNNSPSSSAV CLEGKPPLDE CEDFKLINEI PAGDRHEFKF EFDEINEPSD ETLFNEENHK 300 ALTREENVTF FTKEDNVSSY QQHNEDHDLK GAATLFTLTN CGTY

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence

MTNNFNHNKN INHRHHNHHH LSSSASTITT TRSNSTTQAC AACRYQRRKC APDCILAPYF  60
PHDRQRQFQN AHKLFGVSNI TKIIRDLDPP QKDEAMRTII YQSDVRAQDP VGGCYRIIRE  120
LQRQIELSRT ELEFVLHQLA VCRAHAMQNQ NQNQNHQLLI DDVAIDDPNL YDDPSTVLDN  180
TDNNNNDNDN YQHHGLDLDL GQMPQNEHEH DQFILGEDDL KDDCQDEHAL QLQEINSWAT  240
VNNSPSSSAV CLEGKPPLDE CEDFKLINEI PAGDRHEFKF EFDEINEPSD ETLFNEENHK  300
ALTREENVTF FTKEDNVSSY QQHNEDHDLK GAATLFTLTN CGTY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	4e-54	LBD family protein