PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc011400.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

bHLH

Protein Properties

Length: 471aa MW: 51530 Da PI: 8.0117

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc011400.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	50.2	4.6e-16	291	337	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ Er+RRd+iN+++ +L++l+P+a K +Ka++L +++eY+k+Lq Cse_sc011400.1_g020.1 291 VHNQSERKRRDKINQKMKTLQKLVPNA-----NKTDKASMLDEVIEYLKQLQ 337 6***********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 471 aa Download sequence
MNQCVPSWDV DHENNSRNNS NPARNKASLP PSNSISSTLD VPTLDYEVAE LTWKNGQLAM 60 HGLGPPRVVN KPHANTANLT KYTWDKPHAA ETLEAIVNQA TLQQKQKSHI NIYSDDLVPW 120 LDHHHGSGVT AGTISASGTV DALVPNSNTQ PHALMCTNGV PTNCSTRVGS CNGDQSWYGD 180 HMTAQGGAAT HEWSSCRDHS GSGSATFGME SSRQLTAETC ERELGLKGLT STSTGSPENT 240 VSGKQQSTKS TSPDEHDSVC HSRPQKNEVD EKKKGKGKSS ISTKRSRAAA VHNQSERKRR 300 DKINQKMKTL QKLVPNANKT DKASMLDEVI EYLKQLQGQI NMINRMNMSP MMMPLAMQQQ 360 QLQMAMMNPM GLGMGMGMGM GMPGIMDLNS ISGNRPNIPG MPPVFHPSNF MQPTMASWDM 420 NTTCDQVPNH NDPMAAFLAC QSQPMTMEGY SRMAAMFQQM QNQPTYPGLK N

Sequence ? help Back to Top

Protein Sequence Length: 471 aa Download sequence

MNQCVPSWDV DHENNSRNNS NPARNKASLP PSNSISSTLD VPTLDYEVAE LTWKNGQLAM  60
HGLGPPRVVN KPHANTANLT KYTWDKPHAA ETLEAIVNQA TLQQKQKSHI NIYSDDLVPW  120
LDHHHGSGVT AGTISASGTV DALVPNSNTQ PHALMCTNGV PTNCSTRVGS CNGDQSWYGD  180
HMTAQGGAAT HEWSSCRDHS GSGSATFGME SSRQLTAETC ERELGLKGLT STSTGSPENT  240
VSGKQQSTKS TSPDEHDSVC HSRPQKNEVD EKKKGKGKSS ISTKRSRAAA VHNQSERKRR  300
DKINQKMKTL QKLVPNANKT DKASMLDEVI EYLKQLQGQI NMINRMNMSP MMMPLAMQQQ  360
QLQMAMMNPM GLGMGMGMGM GMPGIMDLNS ISGNRPNIPG MPPVFHPSNF MQPTMASWDM  420
NTTCDQVPNH NDPMAAFLAC QSQPMTMEGY SRMAAMFQQM QNQPTYPGLK N

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	296	301	ERKRRD
2	297	302	RKRRDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00050.1	2e-81	bHLH family protein