PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc010293.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

bHLH

Protein Properties

Length: 487aa MW: 54312.6 Da PI: 7.4468

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc010293.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.6	0.0005	384	416	18	55
HHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 18 safeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ L++++ + +K + a++L +A+ YIk Lq Cse_sc010293.1_g020.1 384 EKITALQQIVSPF-----GKTDTASVLGEAICYIKCLQ 416 6788888888887.....8*****************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 487 aa Download sequence
MINSNRPTTL NKLSSLYIPN TPPPSPNQLK FQSLMYEFIM AEQCNQNSSS TAKWWPDVHA 60 SSLCSWTGGA NYASNNLCNN SQTPNSNCSN GEEDVSISTS FTTNASNNSG LSMESSRRLV 120 EKASTNDPYG EAVSDNHHLW NQVLLGVGTT GELQNTSSRM FEPACDYLKK IDNGWDFLSS 180 THPNQFQKNF NGVNNGLYQN KISQDVVISP QPDQYNGQFT AIKSEHMESD VHREGIFRRG 240 LSCHASEYQA GTNDVVLEDS NKYYDNGMSS DMECANGRGF LDLVGYGSFL NKPVLDLESN 300 VFNKPMMSTM NLPDRMKQGI HNSFQPIRPR GNTLTKSNER GNGVANEGKR KKSEDQSGSL 360 KKPKLETSTV SSTKAQLPKA KLGEKITALQ QIVSPFGKTD TASVLGEAIC YIKCLQEQVQ 420 LLSNPYMKTN IIKDPWVRLE TKDRGDMNLD LKTRGLCLVP LSRTPQVYHE NNGSDYWTPA 480 YRGYIYR

Sequence ? help Back to Top

Protein Sequence Length: 487 aa Download sequence

MINSNRPTTL NKLSSLYIPN TPPPSPNQLK FQSLMYEFIM AEQCNQNSSS TAKWWPDVHA  60
SSLCSWTGGA NYASNNLCNN SQTPNSNCSN GEEDVSISTS FTTNASNNSG LSMESSRRLV  120
EKASTNDPYG EAVSDNHHLW NQVLLGVGTT GELQNTSSRM FEPACDYLKK IDNGWDFLSS  180
THPNQFQKNF NGVNNGLYQN KISQDVVISP QPDQYNGQFT AIKSEHMESD VHREGIFRRG  240
LSCHASEYQA GTNDVVLEDS NKYYDNGMSS DMECANGRGF LDLVGYGSFL NKPVLDLESN  300
VFNKPMMSTM NLPDRMKQGI HNSFQPIRPR GNTLTKSNER GNGVANEGKR KKSEDQSGSL  360
KKPKLETSTV SSTKAQLPKA KLGEKITALQ QIVSPFGKTD TASVLGEAIC YIKCLQEQVQ  420
LLSNPYMKTN IIKDPWVRLE TKDRGDMNLD LKTRGLCLVP LSRTPQVYHE NNGSDYWTPA  480
YRGYIYR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	349	364	KRKKSEDQSGSLKKPK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31050.1	5e-51	bHLH family protein