PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc009940.1_g030.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

HD-ZIP

Protein Properties

Length: 350aa MW: 39043.6 Da PI: 7.3818

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc009940.1_g030.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	54.7	1.7e-17	210	264	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tk+q Le+ F+++++++ +++ LA++l+L rqV vWFqNrRa+ k Cse_sc009940.1_g030.1 210 RKKLRLTKDQSAFLEDSFKEHNTLNPKQKLVLANQLNLRPRQVEVWFQNRRARTK 264 678899***********************************************98 PP
2	HD-ZIP_I/II	126.9	8.6e-41	210	300	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 +kk+rl+k+q+++LE+sF+e+++L+p++K la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l+een+rL+ke +eLr Cse_sc009940.1_g030.1 210 RKKLRLTKDQSAFLEDSFKEHNTLNPKQKLVLANQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKSCCETLTEENRRLQKELQELR 297 69*************************************************************************************9 PP HD-ZIP_I/II 89 eelk 92 +lk Cse_sc009940.1_g030.1 298 -ALK 300 .555 PP

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence
MELALSLGDT PKPILLAGQS KSQQLKMKEV GFCMGLESSS QNQDHQQKNC SEKADDDKTN 60 YSSSSDPPKL QLDLLPFTPS HQAPPPPTHR PFPWLTQILG EPGSQPRLGR GLDVKPITAV 120 YDPGNGEEPT TVLSSPNDSN SDTSSFQMDF SSIFRSSAGS SRFPSRKRDT EFATANMDYL 180 ADISEKDQRF SSNKGVYGGT SDEDENGLCR KKLRLTKDQS AFLEDSFKEH NTLNPKQKLV 240 LANQLNLRPR QVEVWFQNRR ARTKLKQTEV DCEYLKSCCE TLTEENRRLQ KELQELRALK 300 TSQPFYLQHP ATTLTMCPSC ERVVTTTSTT TSATTTATIP QKPTSGCPSH

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence

MELALSLGDT PKPILLAGQS KSQQLKMKEV GFCMGLESSS QNQDHQQKNC SEKADDDKTN  60
YSSSSDPPKL QLDLLPFTPS HQAPPPPTHR PFPWLTQILG EPGSQPRLGR GLDVKPITAV  120
YDPGNGEEPT TVLSSPNDSN SDTSSFQMDF SSIFRSSAGS SRFPSRKRDT EFATANMDYL  180
ADISEKDQRF SSNKGVYGGT SDEDENGLCR KKLRLTKDQS AFLEDSFKEH NTLNPKQKLV  240
LANQLNLRPR QVEVWFQNRR ARTKLKQTEV DCEYLKSCCE TLTEENRRLQ KELQELRALK  300
TSQPFYLQHP ATTLTMCPSC ERVVTTTSTT TSATTTATIP QKPTSGCPSH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	259	267	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	6e-74	HD-ZIP family protein