PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc009694.1_g030.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family HD-ZIP
Protein Properties Length: 729aa    MW: 81210.9 Da    PI: 6.8843
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc009694.1_g030.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.63.3e-2174129156
                            TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
               Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                            r+k +++t+eq++e+e+lF+++++p++++r++L+k+lgL  rqVk+WFqNrR++ k
  Cse_sc009694.1_g030.1  74 RKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKRLGLHPRQVKFWFQNRRTQIK 129
                            7999************************************************9877 PP
2START226.86.4e-712534695206
                            HHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS...SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
                  START   5 eaaqelvkkalaeepgWvkss....esengdevlqkfeeskv..dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                             a++elvk+a+a+ep+W +s     +++n+de+l++f+ +    + +ea+++sgvv+ +l llv++++d+k q+ e+++    ka+tl
  Cse_sc009694.1_g030.1 253 VALEELVKMASAREPLWIRSFetdrDILNYDEYLKEFPIETRssRCVEASKDSGVVFLDLSLLVQTFMDVK-QYEEMFPcmiaKAATL 339
                            5789***************999***************997768999*************************.**************** PP

                            EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEE CS
                  START  83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghsk 163
                            +vi++g      ga+qlm+aelq+l+plv+ R+++fvRy++ql+a++w+ivdvS+d+ +k+  ++s++R++++pSg++ie+ksngh+k
  Cse_sc009694.1_g030.1 340 DVICNGeganrnGAVQLMFAELQMLTPLVAtREVYFVRYSKQLNADKWAIVDVSIDNVEKNI-DASLARCRKRPSGCIIEDKSNGHCK 426
                            ************************************************************98.9************************ PP

                            EEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                  START 164 vtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                            vtw+eh+++++++ h+++r l++sgla+ga++w+atlq+qce+
  Cse_sc009694.1_g030.1 427 VTWIEHFEYEKSVAHSMYRALINSGLAFGARHWMATLQQQCER 469
                            *****************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 729 aa     Download sequence    
MSSSNDNTHP STSLALTLGL FDDRKEENTT TTVVTEISSE NSGPDDEMFD GDHHPDVVDD  60
GDNNNTNTSN TKKRKKYHRH TAEQIREMEA LFKESPHPDE KQRQQLSKRL GLHPRQVKFW  120
FQNRRTQIKA IQERHENSLL KSEMDKLRDE NKLLRETVKK GTCPNCGFGS SSKDAITLTD  180
EQQLRVENAK LKAEVVKSLP IEKLRTSMGK YPQGSSPTNS SSAGNDHENK SSLDLCSGIF  240
GLEKSRIMEI VNVALEELVK MASAREPLWI RSFETDRDIL NYDEYLKEFP IETRSSRCVE  300
ASKDSGVVFL DLSLLVQTFM DVKQYEEMFP CMIAKAATLD VICNGEGANR NGAVQLMFAE  360
LQMLTPLVAT REVYFVRYSK QLNADKWAIV DVSIDNVEKN IDASLARCRK RPSGCIIEDK  420
SNGHCKVTWI EHFEYEKSVA HSMYRALINS GLAFGARHWM ATLQQQCERL VFVLATNVPT  480
KDPSGIATLA GRKSILKLAQ RMTWSFGRAL GASSHHTWRK IPSKTGGDIR VASRKNLNDP  540
GEPLGVILCA VSSVWLPVSH TLLFDFLRDE TRRNEWDIMS NGGPVHSIAT LSKGQDRGNA  600
VSIHTMKSKE NMWMVQDSCT NTYESMVVCA PVSVTNMQSV MAGCDSSTIA VLPSGFSILP  660
DGVETRPLVI TSKAQNQSQD GGSLLTVGFQ ILTSDSPTSK LSVESVESVN ALISSTLRNI  720
KAGLQCEDQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17276KKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein