PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cse_sc009376.1_g030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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Family | LBD | ||||||||
Protein Properties | Length: 237aa MW: 27465.6 Da PI: 4.95 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 132.5 | 1.7e-41 | 20 | 119 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 aCaaC+++rrkC++dC lapyfp+e++++f+n+hklFG+sn++k++++l++ ++++am+s++y++++ra+dPv G++++i++l++q++ Cse_sc009376.1_g030.1 20 ACAACRYQRRKCTPDCLLAPYFPHERQRQFQNAHKLFGVSNITKIIRHLDRPQKDEAMRSIIYQSDVRAQDPVGGCYRIIHELERQIA 107 7*************************************************************************************** PP DUF260 89 qlkaelallkee 100 ++ael+l+ ++ Cse_sc009376.1_g030.1 108 MSHAELELVLQQ 119 ******998776 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence |
MTTHNNLINQ PPRSNSTNQA CAACRYQRRK CTPDCLLAPY FPHERQRQFQ NAHKLFGVSN 60 ITKIIRHLDR PQKDEAMRSI IYQSDVRAQD PVGGCYRIIH ELERQIAMSH AELELVLQQL 120 AVCRNVGVQT QNETRDEECF EFNDDEVDCD PCLYEHHGLN EQNHASVCDD FKLLLIDDVT 180 TLDYKETNKP SEESLYNDEN HKDLLKVEKV SYQEYDEERV VLKDAATFAT LSDCKAT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 8e-51 | LBD family protein |