PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc008559.1_g060.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

SRS

Protein Properties

Length: 406aa MW: 45914.6 Da PI: 8.8017

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc008559.1_g060.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	103.8	3e-32	62	182	4	120
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstkl 91 g++sCqdC qakk+C ++RCRtCCksrgf+C+thv stW+p a r+er l+a ++++++ + ++skr+r + + q+ ++ Cse_sc008559.1_g060.1 62 GGVSCQDCNIQAKKECPYMRCRTCCKSRGFQCQTHVNSTWIPLAIRQERELYLTARQHDQNSWRVVQNSKRTRAVQDHDQNLNMVNQV 149 779****************************************************999999999999999999885554444444444 PP DUF702 92 ssaeskkeletss.....lPeevsseavfrcvrv 120 ++a ++ss lP+ ++++ v + v v Cse_sc008559.1_g060.1 150 ATAG-AIAYNFSSakfevLPPLIEAADVGSQVEV 182 4433.33333333346668999998888777776 PP

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence
MWRPSYCMRV LTIEVPTFWH CDECREKKLV SPKRAVKEHT RDASTKKVSS FMQKRRRNRN 60 GGGVSCQDCN IQAKKECPYM RCRTCCKSRG FQCQTHVNST WIPLAIRQER ELYLTARQHD 120 QNSWRVVQNS KRTRAVQDHD QNLNMVNQVA TAGAIAYNFS SAKFEVLPPL IEAADVGSQV 180 EVAKSFEILE KTVTKSGTKT GTKNDAGVEV GRSDGGKPNP ASALAFSETS NPYIPALNSY 240 WKGSFNLPNG HENLNDVFMA HPPSRVHMKV YEAMVNMPES MNFELAPQEL YMEMFSDSLP 300 NTDDIGLYFF PSLKKRSENS MALTDFLWSK NLLMKSVVGG VELLVFSSKF LKPCSQEFEG 360 NCFLWGVFRC PKDSKNVADA PLLLQVKCEP CDDVPQGFKK ICKPRG

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence

MWRPSYCMRV LTIEVPTFWH CDECREKKLV SPKRAVKEHT RDASTKKVSS FMQKRRRNRN  60
GGGVSCQDCN IQAKKECPYM RCRTCCKSRG FQCQTHVNST WIPLAIRQER ELYLTARQHD  120
QNSWRVVQNS KRTRAVQDHD QNLNMVNQVA TAGAIAYNFS SAKFEVLPPL IEAADVGSQV  180
EVAKSFEILE KTVTKSGTKT GTKNDAGVEV GRSDGGKPNP ASALAFSETS NPYIPALNSY  240
WKGSFNLPNG HENLNDVFMA HPPSRVHMKV YEAMVNMPES MNFELAPQEL YMEMFSDSLP  300
NTDDIGLYFF PSLKKRSENS MALTDFLWSK NLLMKSVVGG VELLVFSSKF LKPCSQEFEG  360
NCFLWGVFRC PKDSKNVADA PLLLQVKCEP CDDVPQGFKK ICKPRG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	1e-28	SRS family protein