PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cse_sc008426.1_g010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 202aa MW: 23500.1 Da PI: 7.1462 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.3 | 3e-19 | 15 | 68 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 R +ft++q+ Le ++e + p +++ +LA+klgL rqV +WFqN+Ra+ k Cse_sc008426.1_g010.1 15 GRKRFTDKQISFLEYMYETQTRPELRMKHQLANKLGLHPRQVAIWFQNKRARSK 68 6999************************************************99 PP | |||||||
2 | HD-ZIP_I/II | 102 | 5.2e-33 | 16 | 105 | 3 | 92 |
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 ++r++++q+++LE ++e++++ e + K++la++Lgl+prqva+WFqn+RAR k++q+E++y++Lk++y++l+ + e+L+ke+++L ++ Cse_sc008426.1_g010.1 16 RKRFTDKQISFLEYMYETQTRPELRMKHQLANKLGLHPRQVAIWFQNKRARSKSRQIEQEYNTLKHNYETLALKSESLKKENQALLSQ 103 79************************************************************************************99 PP HD-ZIP_I/II 91 lk 92 l+ Cse_sc008426.1_g010.1 104 LE 105 97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence |
MAAHAAEARK NKNEGRKRFT DKQISFLEYM YETQTRPELR MKHQLANKLG LHPRQVAIWF 60 QNKRARSKSR QIEQEYNTLK HNYETLALKS ESLKKENQAL LSQLEMLRSV AERHQEDSRR 120 HDSTGNSSGE DSYDRVTNSP TKSDANVTLG NCSKEIDVPF YDSVAYFEDG SKFLNFEELG 180 SVNVWEETAC SLGPDVQKWW EF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.1 | 1e-34 | HD-ZIP family protein |