PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cse_sc008379.1_g080.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 237aa MW: 27204.8 Da PI: 5.4212 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.4 | 2.9e-19 | 43 | 94 | 5 | 56 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++f++eq++ Le+lF+ ++++ +++ e+A++lgL rqV +WFqNrRa++k Cse_sc008379.1_g080.1 43 RRFSDEQIKSLESLFKTENKLEPRKKLEMARELGLHPRQVAIWFQNRRARWK 94 47*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 122.6 | 1.9e-39 | 42 | 132 | 3 | 93 |
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 rr+s+eq+k+LE+ F++e+kLep++K e+areLgl+prqva+WFqnrRAR+k+kq+E+dy++Lk+ yd+l+++ e+L+ke+++L ++ Cse_sc008379.1_g080.1 42 SRRFSDEQIKSLESLFKTENKLEPRKKLEMARELGLHPRQVAIWFQNRRARWKSKQVEQDYSTLKADYDSLSDRFESLKKEKHALLQQ 129 69************************************************************************************99 PP HD-ZIP_I/II 91 lke 93 l++ Cse_sc008379.1_g080.1 130 LRD 132 986 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 237 aa Download sequence |
MLRGANSASP TTENTYDDVF KATPANATPK KKNKHNNNNM NSRRFSDEQI KSLESLFKTE 60 NKLEPRKKLE MARELGLHPR QVAIWFQNRR ARWKSKQVEQ DYSTLKADYD SLSDRFESLK 120 KEKHALLQQL RDLCSQLKEP HEGIKDFESG SENGELNNGN YSSGFSEPLE QDMTICSDED 180 DPMKHSHKEE ELGYVNNAGD HRVSDENVGN FDCLSSLFDQ SSTGTCSSNW WDLWSSN |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 89 | 97 | RRARWKSKQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G46680.1 | 1e-40 | HD-ZIP family protein |