PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc008234.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

AP2

Protein Properties

Length: 378aa MW: 42757.4 Da PI: 5.6668

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc008234.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	34.8	4.3e-11	59	115	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n ++k+ ++++e Aa+ ++ a++k++g Cse_sc008234.1_g020.1 59 SIYRGVTRHRWTGRFEAHLWDkGTWNSiQNKKGKQRAYDSEEAAARTYDLAALKYWG 115 57*****************8888999775545599****************98 PP
2	AP2	55.4	1.5e-17	158	210	1	56
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 s+y+GV +++ +grW+A+I + +k+ +lg++gt eeAa+a++ a+ +++g+ Cse_sc008234.1_g020.1 158 SKYRGVARHHHNGRWEARIGRVLG---NKYLYLGTYGTQEEAAAAYDLAAIEYRGA 210 89**99******988422...5***********************995 PP

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence
MKRRRLSPTC SSSCSSSSSC INELQLPKAK KLKRPNNKNK VNNKNLGSNQ NAETARRSSI 60 YRGVTRHRWT GRFEAHLWDK GTWNSIQNKK GKQRAYDSEE AAARTYDLAA LKYWGPDTTL 120 NFEIDTYKKD IEEMEKLSKD EYLASLRRRS SGFSRGVSKY RGVARHHHNG RWEARIGRVL 180 GNKYLYLGTY GTQEEAAAAY DLAAIEYRGA KAVTNFGISI YADRLKNVVP EVQSTPEATE 240 IVASPKNEQV EDVHHDIICP AQQEQQLEQE QETTLEEIED SLAEIHNLDF APSAEDENPW 300 SLCLDSNYNL LPVPHMPFDK SGELLDLFDD TGFEDNIDII FDGAFSYEYE LEKVDAFITS 360 PSSSSSTTTS LSCPVSHC

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence

MKRRRLSPTC SSSCSSSSSC INELQLPKAK KLKRPNNKNK VNNKNLGSNQ NAETARRSSI  60
YRGVTRHRWT GRFEAHLWDK GTWNSIQNKK GKQRAYDSEE AAARTYDLAA LKYWGPDTTL  120
NFEIDTYKKD IEEMEKLSKD EYLASLRRRS SGFSRGVSKY RGVARHHHNG RWEARIGRVL  180
GNKYLYLGTY GTQEEAAAAY DLAAIEYRGA KAVTNFGISI YADRLKNVVP EVQSTPEATE  240
IVASPKNEQV EDVHHDIICP AQQEQQLEQE QETTLEEIED SLAEIHNLDF APSAEDENPW  300
SLCLDSNYNL LPVPHMPFDK SGELLDLFDD TGFEDNIDII FDGAFSYEYE LEKVDAFITS  360
PSSSSSTTTS LSCPVSHC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	2	6	KRRRL
2	2	33	KRRRLSPTCSSSCSSSSSCINELQLPKAKKLK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54320.1	1e-85	AP2 family protein