PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc008089.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

C2H2

Protein Properties

Length: 495aa MW: 55043.2 Da PI: 9.5167

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc008089.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.4e-05	74	96	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Cse_sc008089.1_g020.1 74 FVCEICNKGFQRDQNLQLHRRGH 96 89*******************88 PP
2	zf-C2H2	12.8	0.00037	151	173	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ Cse_sc008089.1_g020.1 151 WKCEKCSKKYAVQSDWKAHSKTC 173 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 495 aa Download sequence
MMSGEMFPIP LQDHHHHQQQ QQQQQHHQLP THEPNPSPKP ISNLKKKRNL PGTPDPEAEV 60 MALSPKSLMA TNRFVCEICN KGFQRDQNLQ LHRRGHNLPW KLKQRNKQDP IKKKVYICPE 120 VTCVHHDPSR ALGDLTGIKK HFSRKHGEKK WKCEKCSKKY AVQSDWKAHS KTCGTREYKC 180 DCGTLFSRKD SFITHRAFCD ALAEESVRLG TPNSLGLKNE GLNESMMNPN HQPNFPHGFA 240 GMTQFGSGFR PEFGDQNKPR LSLWLDQANS QLNLSPMDQM NMNSNLYMSS SSAGLADMVN 300 VFGSSSMPNY ANSNQMPSLS LTPMTEGLKE ETLASLYSMN QTESTGPMSA TALLQKAAQM 360 GSTRSNPSVF GTSFGLMNTS STTSNSAVSL VNNNITSLPH MTTQLQVSTA MNNNSSNSSP 420 QASNLDHQQM IMSRNEAMAP MKMMQRNFSG VDNGLTRDFL GMGREGGRPF LPQDLVKFAS 480 YGSAMGSMSQ FATNN

Sequence ? help Back to Top

Protein Sequence Length: 495 aa Download sequence

MMSGEMFPIP LQDHHHHQQQ QQQQQHHQLP THEPNPSPKP ISNLKKKRNL PGTPDPEAEV  60
MALSPKSLMA TNRFVCEICN KGFQRDQNLQ LHRRGHNLPW KLKQRNKQDP IKKKVYICPE  120
VTCVHHDPSR ALGDLTGIKK HFSRKHGEKK WKCEKCSKKY AVQSDWKAHS KTCGTREYKC  180
DCGTLFSRKD SFITHRAFCD ALAEESVRLG TPNSLGLKNE GLNESMMNPN HQPNFPHGFA  240
GMTQFGSGFR PEFGDQNKPR LSLWLDQANS QLNLSPMDQM NMNSNLYMSS SSAGLADMVN  300
VFGSSSMPNY ANSNQMPSLS LTPMTEGLKE ETLASLYSMN QTESTGPMSA TALLQKAAQM  360
GSTRSNPSVF GTSFGLMNTS STTSNSAVSL VNNNITSLPH MTTQLQVSTA MNNNSSNSSP  420
QASNLDHQQM IMSRNEAMAP MKMMQRNFSG VDNGLTRDFL GMGREGGRPF LPQDLVKFAS  480
YGSAMGSMSQ FATNN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03150.1	1e-103	C2H2 family protein