PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc007760.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

LBD

Protein Properties

Length: 156aa MW: 17071.1 Da PI: 7.5988

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc007760.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	145.8	1.3e-45	19	118	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +CaaCk+lrr+C+++Cv+apyfpa++p+kfa vhk+FGasnv k+l++lpe++r da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ Cse_sc007760.1_g010.1 19 PCAACKLLRRRCSQECVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEHHRGDAVSSMVYEANARIRDPVYGCVGAISSLQQQID 106 7************************************************************************************* PP DUF260 89 qlkaelallkee 100 l+a+lal ++e Cse_sc007760.1_g010.1 107 VLQAQLALSQAE 118 *****99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 156 aa Download sequence
MKDNGGSGGA GRKQGAASPC AACKLLRRRC SQECVFAPYF PADEPHKFAS VHKVFGASNV 60 NKMLQELPEH HRGDAVSSMV YEANARIRDP VYGCVGAISS LQQQIDVLQA QLALSQAEVV 120 HMRMRQYSTS PVNHSPEDHS PPSPPDTNHF WYEHGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	4e-64	LBD family protein