PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc007714.1_g040.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family GRAS
Protein Properties Length: 486aa    MW: 54638.2 Da    PI: 5.7029
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc007714.1_g040.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS431.65.9e-1321214861374
                   GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 
                            l+e+L++cA+avs++d++ aq ++++l++++s +g+p+qRl ay++e+L arl++s+s+++k     e +   s+e l+++++++ev+
  Cse_sc007714.1_g040.1 121 LKEVLIACANAVSNNDFATAQFYISELQQMVSVAGEPIQRLGAYMLEGLVARLSSSGSSICK-----EPA---SDELLSYTNTLYEVC 200
                            5789***************************************************8888874.....444...78999999******* PP

                   GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgv 174
                            P++kf+++ aN aI ea++ e+rvHiiDf+i+qG QW++L+qa+a+R++gpp++RiTg+++++s   +   l+ +g+rL k+A++ +v
  Cse_sc007714.1_g040.1 201 PYFKFGYMSANGAIAEAMKDESRVHIIDFQIGQGSQWVPLIQAFAARRGGPPHIRITGFDDSTSAraRGGGLNIVGQRLGKLARAYNV 288
                            *************************************************************998888999****************** PP

                   GRAS 175 pfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleale 262
                            pfefn+ ++ +++++ ++++r++p EalaVn+++ lh++ desvs+e++rd++L+lvks++Pkvv++veqe+++n++ F  rfleal+
  Cse_sc007714.1_g040.1 289 PFEFNA-ASVSVSEVGIQHFRLRPAEALAVNFAFVLHHMADESVSTENHRDRILRLVKSMKPKVVTLVEQESNTNTAAFYPRFLEALD 375
                            ******.899****************************************************************************** PP

                   GRAS 263 yysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyr 350
                            yy a+f+s++++lpr++++ri+vE+++l++++vn++aceg+er+erhe  +kW+ r+++aGF+p+pls+ ++ ++k+ll+k++++ yr
  Cse_sc007714.1_g040.1 376 YYNAMFESMDVSLPRDHKKRINVEQHCLAKDVVNIIACEGNERVERHELIGKWKLRFMMAGFTPYPLSSLVNGTIKTLLKKYSDR-YR 462
                            ***********************************************************************************66.** PP

                   GRAS 351 veeesgslvlgWkdrpLvsvSaWr 374
                            +ee++g+l+lgW++r Lv+ +aW+
  Cse_sc007714.1_g040.1 463 LEERDGALYLGWMNRDLVASCAWK 486
                            ***********************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    
MSNAWYYQSM QEFDFICKPQ FQTLDSIGYG NNLLIKPEPY STLDSSSASG SYTLDSPATE  60
SCVTDDLNDF KKRLRQLESV MLSDLYEDTE YGKLLVGNGI VDLPDIEIWK EMVEGVPKRD  120
LKEVLIACAN AVSNNDFATA QFYISELQQM VSVAGEPIQR LGAYMLEGLV ARLSSSGSSI  180
CKEPASDELL SYTNTLYEVC PYFKFGYMSA NGAIAEAMKD ESRVHIIDFQ IGQGSQWVPL  240
IQAFAARRGG PPHIRITGFD DSTSARARGG GLNIVGQRLG KLARAYNVPF EFNAASVSVS  300
EVGIQHFRLR PAEALAVNFA FVLHHMADES VSTENHRDRI LRLVKSMKPK VVTLVEQESN  360
TNTAAFYPRF LEALDYYNAM FESMDVSLPR DHKKRINVEQ HCLAKDVVNI IACEGNERVE  420
RHELIGKWKL RFMMAGFTPY PLSSLVNGTI KTLLKKYSDR YRLEERDGAL YLGWMNRDLV  480
ASCAWK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.10.0GRAS family protein