PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc007334.1_g010.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family M-type_MADS
Protein Properties Length: 317aa    MW: 36011.2 Da    PI: 4.6496
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc007334.1_g010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF46.26e-151271661049
                            HHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                 SRF-TF  10 qvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 
                            +vtfskR  g++KKA EL+v  +ae+ +i+ s+ g++ ++
  Cse_sc007334.1_g010.1 127 EVTFSKRHSGLFKKAGELCVFMGAEIGIIVQSPGGHIITF 166
                            79***********************************999 PP
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    
PRKEDNGCGY FIWKDEFFEY LRTIFSQGSG SAPTECSSCH EKDLRLNLLE SQKHVLETRV  60
RLLEARLEMA RIPDDHACQS DALLRELLVV AVVVVVVVVD LVDVVVDVVD QIPGESLLAR  120
PYDCCSEVTF SKRHSGLFKK AGELCVFMGA EIGIIVQSPG GHIITFGHPN VEEIITRYQN  180
PVTITYTIDQ GRTYAITRWF PGTTLGIEGN HLGFLAGSAT AIDASQNKAP PLKEFNQQYL  240
EVSKELEMEK RRKELIDESK MVNSNGIPWY DEDISNIKEE ELEQYIFRLW SNYGGMFYYV  300
QMTFTMLVLV METIFSI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36590.11e-18M-type_MADS family protein