PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cse_sc007243.1_g080.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 239aa MW: 25218.5 Da PI: 7.0374 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 123.9 | 7.9e-39 | 23 | 123 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasn +kll ++p ++r da+ +++yeA+ar+rdPv+G+v+++++lqqq+ Cse_sc007243.1_g080.1 23 PCGACKFLRRKCVAGCIFAPYFDSEQgAAHFAAVHKVFGASNFSKLLLHIPVHKRLDAVVTVCYEAQARIRDPVNGCVAHLFALQQQV 110 7***********************9989************************************************************ PP DUF260 88 eqlkaelallkee 100 ++l+ael++ +++ Cse_sc007243.1_g080.1 111 ANLQAELSYFRSH 123 *******998775 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 239 aa Download sequence |
MSANPSTSQT AGGGSSVASG SGPCGACKFL RRKCVAGCIF APYFDSEQGA AHFAAVHKVF 60 GASNFSKLLL HIPVHKRLDA VVTVCYEAQA RIRDPVNGCV AHLFALQQQV ANLQAELSYF 120 RSHLATLEVQ LPPPPPQVPT STAAFSIADL PITTSCLPAI YDLSVLFDPM IQSSSWSMQP 180 SSRLMDPDHQ FSGATTSTPS QHDSGGGGST GDLHELAREL LQRQSIGSSE ASALPPHSK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G45420.1 | 9e-72 | LBD family protein |