PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc007220.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

WRKY

Protein Properties

Length: 347aa MW: 38719.1 Da PI: 5.2232

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc007220.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	104.5	5.6e-33	178	236	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s+fprsY+rCts C vkk+vers+edp++v++tYeg+H+h+ Cse_sc007220.1_g010.1 178 LDDGYRWRKYGQKAVKNSPFPRSYHRCTSVACGVKKRVERSSEDPSIVITTYEGTHTHP 236 59********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence
MEKKEDLNNN NKTLKNTNLM ANSTFSDQIP THYGANSGGN FFDSIPQGYL DDVLSFQDYG 60 GSSLFDLLQQ PIAPPSLVDE PPSLPPPPPT ETMDMVNTPT QNSSSISCSS NDAANNGDQD 120 NTNSNNKEHN DGEDDDDDDD DDQQKTTTNK QLKPKKKNPK KQREPRFAFM TKSDIDHLDD 180 GYRWRKYGQK AVKNSPFPRS YHRCTSVACG VKKRVERSSE DPSIVITTYE GTHTHPYPMT 240 PRGTIGILPE TPTYGGFSGG GGISSFLFTQ PHYQQLQPYF NNQTSNSTSL SFGNTNANAH 300 SSSYSHYLQE RRFSPSPASS SMLRDHGLLQ DVVPFEIRKD EPKEEQN

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence

MEKKEDLNNN NKTLKNTNLM ANSTFSDQIP THYGANSGGN FFDSIPQGYL DDVLSFQDYG  60
GSSLFDLLQQ PIAPPSLVDE PPSLPPPPPT ETMDMVNTPT QNSSSISCSS NDAANNGDQD  120
NTNSNNKEHN DGEDDDDDDD DDQQKTTTNK QLKPKKKNPK KQREPRFAFM TKSDIDHLDD  180
GYRWRKYGQK AVKNSPFPRS YHRCTSVACG VKKRVERSSE DPSIVITTYE GTHTHPYPMT  240
PRGTIGILPE TPTYGGFSGG GGISSFLFTQ PHYQQLQPYF NNQTSNSTSL SFGNTNANAH  300
SSSYSHYLQE RRFSPSPASS SMLRDHGLLQ DVVPFEIRKD EPKEEQN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49520.1	2e-56	WRKY family protein