PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc007028.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

HD-ZIP

Protein Properties

Length: 292aa MW: 33609.6 Da PI: 6.0013

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc007028.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.7	1.9e-18	83	136	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe ++++ e++ +LA+ lgL+ rq+ +WFqNrRa++k Cse_sc007028.1_g010.1 83 KKRRLNMEQVKTLERNFEFGNKLDPERKMQLARALGLQPRQIAIWFQNRRARWK 136 456899***********************************************9 PP
2	HD-ZIP_I/II	128	4e-41	82	174	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 ekkrrl+ eqvk+LE++Fe +kL+perK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdy++Lk++++a+k++ne+L +++++L+ Cse_sc007028.1_g010.1 82 EKKRRLNMEQVKTLERNFEFGNKLDPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDVLKSQFEAIKAQNESLVSQNHKLQ 169 69************************************************************************************** PP HD-ZIP_I/II 89 eelke 93 +e+++ Cse_sc007028.1_g010.1 170 AEIMA 174 99975 PP

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence
MTCNGMAFFP TNFMLQATDQ EDEHHTPHSL SPLLQPCTTT QDYHGVGSFL GKRSMPYGTE 60 LCDQETNNGD DELSDDGLLG GEKKRRLNME QVKTLERNFE FGNKLDPERK MQLARALGLQ 120 PRQIAIWFQN RRARWKTKQL EKDYDVLKSQ FEAIKAQNES LVSQNHKLQA EIMALKNKEP 180 TESINLNIKE TEGSCSNRSE NSSEIKLDIS RTPRIDSPLT LHNNHHNHYQ PIPNLFPSSI 240 VDRSSQIFHN LSTSQKIDQS VTIKEESLCN LFVGMEDQSG FWPWLEQQQQ FN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	131	139	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69780.1	1e-105	HD-ZIP family protein