PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cse_sc006617.1_g040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 337aa MW: 37472.6 Da PI: 7.4669 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 53.8 | 3.3e-17 | 173 | 227 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k q Lee F+++++++ +++ LA++l+L rqV vWFqNrRa+ k Cse_sc006617.1_g040.1 173 RKKLRLSKVQSAYLEESFKEHNTLNPKQKIALAERLNLRPRQVEVWFQNRRARTK 227 7788999**********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 123.1 | 1.4e-39 | 173 | 263 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 +kk+rlsk q++ LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+dye+Lkr++++l++en+rL ke +eLr Cse_sc006617.1_g040.1 173 RKKLRLSKVQSAYLEESFKEHNTLNPKQKIALAERLNLRPRQVEVWFQNRRARTKLKQTEVDYEYLKRCCETLTDENRRLYKELQELR 260 69*************************************************************************************9 PP HD-ZIP_I/II 89 eelk 92 +lk Cse_sc006617.1_g040.1 261 -ALK 263 .555 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 337 aa Download sequence |
MELGLSLGDT PPSNPTNQLT SKTTTSNSLG FCMALGMNPL NGSTHKPQAQ DCDDEDDDDH 60 EHSLKERRVG AQRITSLNPP VQLDLLPSGP VPRHTSFPWS SDNGSSEGGS SGNAAARKGL 120 TVVTEEATSS FRLDFMGYRR IGNNVNGDGK NDVVEVERAS SRASDEDDNG MSRKKLRLSK 180 VQSAYLEESF KEHNTLNPKQ KIALAERLNL RPRQVEVWFQ NRRARTKLKQ TEVDYEYLKR 240 CCETLTDENR RLYKELQELR ALKTTSNPFY MQRPATTLTM CPSCERVATT STVPTSTTLT 300 NNMDPSTNKT STTPQLTLSA TSRSLTPTTS QQQLPHE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 172 | 178 | SRKKLRL |
2 | 222 | 230 | RRARTKLKQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 8e-78 | HD-ZIP family protein |