PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cse_sc005809.1_g020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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Family | GRAS | ||||||||
Protein Properties | Length: 165aa MW: 18898.4 Da PI: 4.487 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 117.6 | 1.6e-36 | 10 | 158 | 223 | 373 |
GRAS 223 erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhe 310 +d++L+++ksl+P++v++v++++d++s+s++ r++ ++++ + fd+le+ lp++s +r +E+ +g +i+n++ eg+er+er e Cse_sc005809.1_g020.1 10 SKDSFLEIIKSLNPRIVTIVDEDSDLGSSSLASRITTCFNFLWIPFDALETFLPKDSYQRLDYEAD-IGHKIENIIGFEGRERIERLE 96 3599**************************************************************.********************* PP GRAS 311 tlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 + +k ++r+++ GF +vp++e++ +++k ll +++ g+ ++ e++ +vl+Wk+++ v ++aW Cse_sc005809.1_g020.1 97 SGAKLSQRMRNLGFLSVPFGEDTISEVKFLLGEHA-SGWGMKTEEDMIVLTWKGHNSVYATAW 158 ***********************************.77888999999**************** PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 165 aa Download sequence |
MRYMPDIALS KDSFLEIIKS LNPRIVTIVD EDSDLGSSSL ASRITTCFNF LWIPFDALET 60 FLPKDSYQRL DYEADIGHKI ENIIGFEGRE RIERLESGAK LSQRMRNLGF LSVPFGEDTI 120 SEVKFLLGEH ASGWGMKTEE DMIVLTWKGH NSVYATAWFP YGFEE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49950.1 | 9e-49 | GRAS family protein |