PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc005746.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

GRF

Protein Properties

Length: 385aa MW: 42666.4 Da PI: 7.9448

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc005746.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	76.6	2.5e-24	83	127	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRC +++++++k+CErH+hrgr+rsrk++e+ Cse_sc005746.1_g020.1 83 DPEPGRCRRTDGKKWRCAKDAYPDSKYCERHMHRGRNRSRKPVES 127 79****************************************986 PP
2	QLQ	60.7	4e-21	21	56	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FTa Q+q+L++Q+l+yKyL+a++PvP +L+++i++ Cse_sc005746.1_g020.1 21 PFTAVQWQELEHQALIYKYLVAGVPVPYDLVVPIRR 56 9*********************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence
MSGSTTVASS GGGGMSGYRP PFTAVQWQEL EHQALIYKYL VAGVPVPYDL VVPIRRSLEA 60 LSARFFNHPN SLGYCSYYGK KFDPEPGRCR RTDGKKWRCA KDAYPDSKYC ERHMHRGRNR 120 SRKPVESQTA SQSLSTAVSQ VTTVSSTGGN RSYQSLGSGS FQNSNLYSNS NSGSLDFGSN 180 VSKLQLNAST YGLNNNNFRF DQGLTVDVDD RNYSSGASSA RGLGMESNAD STWRLVPAQL 240 PTASLMESRN DSYLQTKSPQ LTMVNAFDPI LDAIPVSKSA QQHCLFGNKI DSPVEPKHEQ 300 HMMRPFFDEW PEAREQWSSL DVDSKNSFST TQLSMSTASE YSGGNECSPN GMLSMRKNGH 360 FSDERLCQRC CVYLIMLYDL EITSG

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence

MSGSTTVASS GGGGMSGYRP PFTAVQWQEL EHQALIYKYL VAGVPVPYDL VVPIRRSLEA  60
LSARFFNHPN SLGYCSYYGK KFDPEPGRCR RTDGKKWRCA KDAYPDSKYC ERHMHRGRNR  120
SRKPVESQTA SQSLSTAVSQ VTTVSSTGGN RSYQSLGSGS FQNSNLYSNS NSGSLDFGSN  180
VSKLQLNAST YGLNNNNFRF DQGLTVDVDD RNYSSGASSA RGLGMESNAD STWRLVPAQL  240
PTASLMESRN DSYLQTKSPQ LTMVNAFDPI LDAIPVSKSA QQHCLFGNKI DSPVEPKHEQ  300
HMMRPFFDEW PEAREQWSSL DVDSKNSFST TQLSMSTASE YSGGNECSPN GMLSMRKNGH  360
FSDERLCQRC CVYLIMLYDL EITSG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	1e-47	GRF family protein