PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cse_sc004803.1_g050.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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Family | LBD | ||||||||
Protein Properties | Length: 246aa MW: 26417.8 Da PI: 8.5619 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 132.3 | 1.9e-41 | 52 | 151 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +CaaCk+lrr+Ca++C+++pyf ++p+kfa+vhk+FGasnv+kll ++pe++r da++slvyeA++r+rdP+yG++g i++lqqq++ Cse_sc004803.1_g050.1 52 PCAACKLLRRRCAEECPFSPYFSPHEPHKFAAVHKIFGASNVSKLLMEVPESQRADAANSLVYEANVRLRDPIYGCMGAISALQQQIQ 139 7*************************************************************************************** PP DUF260 89 qlkaelallkee 100 +l+++l+++++e Cse_sc004803.1_g050.1 140 SLQSDLNAVRAE 151 *******99987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence |
LFYCGAVVRD FYDDAGKRIK REIDAYINTT AGQMGRRQIL IPPPGTLNTI TPCAACKLLR 60 RRCAEECPFS PYFSPHEPHK FAAVHKIFGA SNVSKLLMEV PESQRADAAN SLVYEANVRL 120 RDPIYGCMGA ISALQQQIQS LQSDLNAVRA EILRYKYREA AANTHDINII ASTLVSSGPI 180 AASQLSSIPA PATPPPPQPS IVISSSSSSS SSSSSSSSVH LYGIPSSTSG YSTSTIPNNN 240 VSSYFA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40470.1 | 2e-75 | LBD family protein |