PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cse_sc004578.1_g020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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Family | LBD | ||||||||
Protein Properties | Length: 158aa MW: 18028.3 Da PI: 7.9385 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 112.9 | 2.1e-35 | 26 | 125 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqql 87 aCaaC r+kCa++C+lapyfp+++ ++f+nv+klFG+s ++k++k+ +++e ++dam+s++yeA+arardP G+ +++ +l qq+ Cse_sc004578.1_g020.1 26 ACAACHSRRQKCAPGCILAPYFPHDRLQQFQNVRKLFGVSFITKTIKDHDDQEeKDDAMTSIIYEANARARDPAGGSSRILIELDQQI 113 7***********************************************9666659********************************* PP DUF260 88 eqlkaelallke 99 +++++el+ +k+ Cse_sc004578.1_g020.1 114 REAESELDIVKQ 125 *******99886 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 158 aa Download sequence |
MSNQNNHPNK NNNQLPPPRR KPSDPACAAC HSRRQKCAPG CILAPYFPHD RLQQFQNVRK 60 LFGVSFITKT IKDHDDQEEK DDAMTSIIYE ANARARDPAG GSSRILIELD QQIREAESEL 120 DIVKQLVALC KRIGLQKLHQ IINDQGFDLD HHHDQMGR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 1e-31 | LBD family protein |