PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc004402.1_g030.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

WRKY

Protein Properties

Length: 586aa MW: 65305.9 Da PI: 5.027

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc004402.1_g030.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	70.3	2.7e-22	180	241	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 +dDg++WrKYGqK++ +s++ rsYYrCt++ gC ++k+v++ ++ p +++Y+g+H+++ Cse_sc004402.1_g030.1 180 VDDGHAWRKYGQKKILNSKYQRSYYRCTYKfdqGCLATKQVQQIQDSPPKYKTIYSGDHTCK 241 59*************************9999*************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 586 aa Download sequence
MDDTDDFGIP TKEVNKDVDA GSTMAEKKNE SPKTSNKKDF PSTSSTKRVN PLFKSSSWPE 60 SLPSNRVQAI QTLTEGQEMI NILCEMLLWP EEIDSGPISD GLVARIQGMF ENTLSIMSSC 120 SSNESIQLMK SDVHSPCSSD EEKSKYSDIH KTITPARIKR GCYKRSKNTW TSAQIASVLV 180 DDGHAWRKYG QKKILNSKYQ RSYYRCTYKF DQGCLATKQV QQIQDSPPKY KTIYSGDHTC 240 KNLQRAPTIV LDVPEPRDTS IRLIFEKKGF VENKHVEPCF PSIEQELKEG FPLTGSLRHN 300 EPSFSNNYLS VEQNTYTSKG PLEPIYMTQF GQGDIISSNA YSYAANTHEE ILGMPRLVVN 360 VAELKGQEAV NAGVQQPRKA NELESDDNAT RFHATDFLSG SSGSRSDGQV PQSQKELEEM 420 LSAIGYSKPP QDTSGPMASS VHGAVGIEKD GVHALKQPAA SLECSKKATG VDLSVPMKVV 480 EEINTRFENT LYGYFLGKRL AFPVVDYFVR NVWAKFVGEI VVSDSEDEVV ANPFDESANI 540 FGGGQEFEDE YDDYDFDDYA KQVRNLPGNL DAFNAMYGTT FQGPRK

Sequence ? help Back to Top

Protein Sequence Length: 586 aa Download sequence

MDDTDDFGIP TKEVNKDVDA GSTMAEKKNE SPKTSNKKDF PSTSSTKRVN PLFKSSSWPE  60
SLPSNRVQAI QTLTEGQEMI NILCEMLLWP EEIDSGPISD GLVARIQGMF ENTLSIMSSC  120
SSNESIQLMK SDVHSPCSSD EEKSKYSDIH KTITPARIKR GCYKRSKNTW TSAQIASVLV  180
DDGHAWRKYG QKKILNSKYQ RSYYRCTYKF DQGCLATKQV QQIQDSPPKY KTIYSGDHTC  240
KNLQRAPTIV LDVPEPRDTS IRLIFEKKGF VENKHVEPCF PSIEQELKEG FPLTGSLRHN  300
EPSFSNNYLS VEQNTYTSKG PLEPIYMTQF GQGDIISSNA YSYAANTHEE ILGMPRLVVN  360
VAELKGQEAV NAGVQQPRKA NELESDDNAT RFHATDFLSG SSGSRSDGQV PQSQKELEEM  420
LSAIGYSKPP QDTSGPMASS VHGAVGIEKD GVHALKQPAA SLECSKKATG VDLSVPMKVV  480
EEINTRFENT LYGYFLGKRL AFPVVDYFVR NVWAKFVGEI VVSDSEDEVV ANPFDESANI  540
FGGGQEFEDE YDDYDFDDYA KQVRNLPGNL DAFNAMYGTT FQGPRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56400.1	1e-32	WRKY family protein