PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc004173.1_g060.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family M-type_MADS
Protein Properties Length: 302aa    MW: 34382.6 Da    PI: 8.6844
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc004173.1_g060.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF52.27.6e-171253445
                           -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                 SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                            ++ nr++ f +R++gi KKA EL +LCd++v++iifs +++
  Cse_sc004173.1_g060.1 12 IDNKNRSIAFKRRKAGIVKKARELAILCDVKVSMIIFSDHQE 53
                           5778**********************************9875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    
MGRVKISMVP IIDNKNRSIA FKRRKAGIVK KARELAILCD VKVSMIIFSD HQENKPQIFP  60
LDDPRMLNDS INAYKSKRVS EPVKIRSYGL LDFYKDRKNK IEDDLAKAKK QTLEAKYPTP  120
FGFLNSSSEG ELRNFASVLR TKIDQVKRSP EFLRKVPQIE TLDVQDSSCT QLANPMTMMR  180
PIGYNDFALN HVGHCESLNP NSLMSMLMMG EDKNEYYRRM SMGHHEFVHD NVGLYGDHDN  240
KMLCMESSNL APISTDDSGC HNDANSGLPS LPETMPLPMP KQSPFLQMNS FMMSSFPSQV  300
FN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22630.17e-13MIKC_MADS family protein