PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc004154.1_g070.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

bHLH

Protein Properties

Length: 272aa MW: 30624.9 Da PI: 8.1333

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc004154.1_g070.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41.3	2.7e-13	83	129	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+h+e+ErrRR+riN ++ Lr+l+P +K++Ka+ L +++ ++k++ Cse_sc004154.1_g070.1 83 RNHSEAERRRRERINGHLSMLRSLVPGT-----TKMDKASLLAEVISHLKHM 129 58***********************9.....8***************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence
MDFPPNCFKG FTSSEEHVLK EMMMMSRVRT TSSSSSLVLD NEKGEIVRAL VTPGNIRHTF 60 HDDHDHANLQ KGAKGEKALM ALRNHSEAER RRRERINGHL SMLRSLVPGT TKMDKASLLA 120 EVISHLKHMR MTTTEATKGV LIPMDIDEVK VEQQDENSLD GSSYSIRASL CCEYKHEVLL 180 DLKEALDGLQ LKTIRAEIAT LGSRMMNLFV ITGSKDEVNI KDIVSSIRQA LKSVLDKFYA 240 SQEFSESNSL SNKRRRVSFF TPSSSSSLGD FW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	89	94	ERRRRE
2	253	257	KRRRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	4e-35	bHLH family protein