PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc003930.1_g070.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

HB-PHD

Protein Properties

Length: 726aa MW: 80175.9 Da PI: 4.5728

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc003930.1_g070.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	36.2	1e-11	533	576	9	52
HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 + +++L+e+F++n+yp++e++e+L ++l++t qV+ WF R Cse_sc003930.1_g070.1 533 EAVTQRLQEVFKENQYPDKEAKEKLVQELKITHHQVTKWFGHAR 576 56789***********************************9887 PP
2	PHD	39.7	1.1e-13	201	256	1	51
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ C + +++++lCdg C++ fH+ Cl+++l +e++p g wlC+ C++k Cse_sc003930.1_g070.1 201 FCSKCAQsdVRLDNDIILCDGaCDRGFHQFCLDPPLLKEQVPPGdeGWLCPACDCK 256 699**54444****66****************9999*****985 PP

Sequence ? help Back to Top
Protein Sequence Length: 726 aa Download sequence
MNSERVCNEN GQKSHENGEI HKSSEVLCGT PIREATQENQ ANGSSQPDKR SKGRPSKTKQ 60 TFTGTPRVLR SRSQEKPKIP EPVEAPSQDA DSKEKKKRKK KNINKDEKDE FSKIKTHLRY 120 LIKRMDYEQN FIDAYVGEGW KGQSLEKLRP EKELERAKSD INRYKLKIRD LFKQIDTSLE 180 EGRFPETLYD SDGLIDSEDI FCSKCAQSDV RLDNDIILCD GACDRGFHQF CLDPPLLKEQ 240 VPPGDEGWLC PACDCKVDCV DLINETQGTD LSVNDSWEMV FPESVASGNT LDDSLGLPSD 300 DSEDDDFNPD APEVEDDGEG DGEGEEEGDG DESSSDESDF SSASEDLGAV ANNDPLLALP 360 SDDSEDDDFN PDKADSGSDG EAKTKSSGSD DDDFTSDSDD LRDICKNEGT LDEVQGHAMF 420 ENDEETKTDM EDDDSGPITA KRQVERLDYK KLHDEAYGNT SSDSSDEDFS DTEAPSNPKN 480 RKPTKGTGST KKQKPSESTP ITKNGKKPDA EGSSADRSSA KTGTKSAHRR LGEAVTQRLQ 540 EVFKENQYPD KEAKEKLVQE LKITHHQVTK WFGHARWNLN HPGKRTKAGT STPEPNTNTT 600 TKPATTTTTT TTQEISMTNQ ANVANSTTPK STTTTTTPRE ISMTDKANVA NSTTPKSTTT 660 TTTTREISMT DQANVANSTT PKSRKRKTKA DSQNDNEITP NLKEASPTVP PNQSVRRSGR 720 VQAKRS

Sequence ? help Back to Top

Protein Sequence Length: 726 aa Download sequence

MNSERVCNEN GQKSHENGEI HKSSEVLCGT PIREATQENQ ANGSSQPDKR SKGRPSKTKQ  60
TFTGTPRVLR SRSQEKPKIP EPVEAPSQDA DSKEKKKRKK KNINKDEKDE FSKIKTHLRY  120
LIKRMDYEQN FIDAYVGEGW KGQSLEKLRP EKELERAKSD INRYKLKIRD LFKQIDTSLE  180
EGRFPETLYD SDGLIDSEDI FCSKCAQSDV RLDNDIILCD GACDRGFHQF CLDPPLLKEQ  240
VPPGDEGWLC PACDCKVDCV DLINETQGTD LSVNDSWEMV FPESVASGNT LDDSLGLPSD  300
DSEDDDFNPD APEVEDDGEG DGEGEEEGDG DESSSDESDF SSASEDLGAV ANNDPLLALP  360
SDDSEDDDFN PDKADSGSDG EAKTKSSGSD DDDFTSDSDD LRDICKNEGT LDEVQGHAMF  420
ENDEETKTDM EDDDSGPITA KRQVERLDYK KLHDEAYGNT SSDSSDEDFS DTEAPSNPKN  480
RKPTKGTGST KKQKPSESTP ITKNGKKPDA EGSSADRSSA KTGTKSAHRR LGEAVTQRLQ  540
EVFKENQYPD KEAKEKLVQE LKITHHQVTK WFGHARWNLN HPGKRTKAGT STPEPNTNTT  600
TKPATTTTTT TTQEISMTNQ ANVANSTTPK STTTTTTPRE ISMTDKANVA NSTTPKSTTT  660
TTTTREISMT DQANVANSTT PKSRKRKTKA DSQNDNEITP NLKEASPTVP PNQSVRRSGR  720
VQAKRS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	95	101	KKKRKKK
2	96	100	KKRKK
3	683	688	SRKRKT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	5e-71	HB-PHD family protein