PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cse_sc003903.1_g030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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Family | LBD | ||||||||
Protein Properties | Length: 227aa MW: 24940.3 Da PI: 8.7117 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 133 | 1.2e-41 | 42 | 141 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vhk+FGasnv+kll ++pe++r da++slvyeA++r+rdPvyG++g i++lq+q++ Cse_sc003903.1_g030.1 42 PCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKLLMEVPENQRADAANSLVYEANIRLRDPVYGCMGAISALQHQVQ 129 7*************************************************************************************** PP DUF260 89 qlkaelallkee 100 +l+ael+++++e Cse_sc003903.1_g030.1 130 SLQAELNAVRAE 141 ********9987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence |
MSRERERFDE IGKKIKRDID ASFQLGRRHM LGLPGTLNTI TPCAACKLLR RRCAQECPFS 60 PYFSPHEPQK FASVHKVFGA SNVSKLLMEV PENQRADAAN SLVYEANIRL RDPVYGCMGA 120 ISALQHQVQS LQAELNAVRA EILRYKYSEP QSDHSSIPST HHLPLFSTGA VPVTTQALPP 180 PPSTPLSPPP PPPPPPPRAS SSSSMYTPPS ATTDYSTITN DNVSYFG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40470.1 | 5e-82 | LBD family protein |