PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc003732.1_g080.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

MYB

Protein Properties

Length: 297aa MW: 34614.9 Da PI: 6.6274

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc003732.1_g080.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32.7	1.8e-10	7	49	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +W++eEde l++ v++ G W++I + ++ g++++ c srw++ Cse_sc003732.1_g080.1 7 PWSPEEDEMLLNIVEKCGLIEWSLIINSIP-GKSAETCWSRWLS 49 8***************************.*********87 PP
2	Myb_DNA-binding	42.2	1.8e-13	61	103	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 W++eEde l +v+++G + W+ I++ + gR++k c srw+++ Cse_sc003732.1_g080.1 61 QWSPEEDEMLEYLVEKYGRN-WSQISNSTP-GRSAKTCWSRWLSL 103 6***************66.*****.*********976 PP
3	Myb_DNA-binding	48.4	2.1e-15	114	156	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 W++eEde l +v+++G + W++I++ ++ g+++k+c srw+++ Cse_sc003732.1_g080.1 114 QWSPEEDEMLEYLVEKHGHN-WSRISKSIP-GKSAKSCWSRWLSL 156 6***************88.*****.*********976 PP
4	Myb_DNA-binding	43.5	7.5e-14	160	200	4	46
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +T eEd+ l ++v+++G++ W++I++ ++ gR++k c +rw + Cse_sc003732.1_g080.1 160 FTSEEDKMLQNLVEKHGPN-WSLISKSIP-GRSAKTCELRWET 200 9**************77.*****.*********75 PP

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence
MDQIERPWSP EEDEMLLNIV EKCGLIEWSL IINSIPGKSA ETCWSRWLSL AKKDMDQIER 60 QWSPEEDEML EYLVEKYGRN WSQISNSTPG RSAKTCWSRW LSLVKQEMDH IERQWSPEED 120 EMLEYLVEKH GHNWSRISKS IPGKSAKSCW SRWLSLQWSF TSEEDKMLQN LVEKHGPNWS 180 LISKSIPGRS AKTCELRWET VWNPLQIHED IENHRNSTLK WKSSSMTNED IAIVKRFENK 240 AKMVRGTGVG TRCRSSSGGW PVANQNATCD RYDDIAEVSV QGSRSSDWPI RGRHVSK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18100.2	4e-23	MYB family protein