PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc003317.1_g040.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

Nin-like

Protein Properties

Length: 719aa MW: 81763.8 Da PI: 5.1073

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc003317.1_g040.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	74.6	1.2e-23	273	323	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++++++dl yF+ pi++AAk+++ c+Tv+Kr CR++G++RWP+Rki+s+ Cse_sc003317.1_g040.1 273 TEKLTMKDLTVYFHIPIEAAAKKINFCPTVIKRVCRKHGLSRWPYRKIRSI 323 689**********************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 719 aa Download sequence
MDETNAILPY NEPFEQRLQE YEHFLMHDEN DTEVPSTSQQ IDPPMGEDDP LVDNSFIFYN 60 DLFDEGLQTN TTPVNDETNV GSSELGNPIH LSSWPLQVPP YTCSCCQNLR EISHTNGVDI 120 TKLEIHGRLG VISHAVLEKY SVDLTTNQTH EYKMFDSINW NAVLYQLFGL YFVVPFVASF 180 CKESIVRVKE FLVEYCNERK TNGYIMLQDP LSSFYEAVCV GLDWEDNTVI DDLIPDLFPD 240 DSGEHQMIQI SDVETSGARS LNRSTLSIQR ERTEKLTMKD LTVYFHIPIE AAAKKINFCP 300 TVIKRVCRKH GLSRWPYRKI RSIEKKISMR ATYLTSVDVE KRDSIMKSNE MSYSQTLVCV 360 KQVKQEAVEE WDDSMPLPGD IIEGIAPVDS YTFEGVEDKL FVPTKGKSEL KSLLRSISKR 420 NADGFVWLKV RRGDQMVNMR VCAVQEKRFR LQRKFSFRAV SNEKHVAVLD DLDFDQCTEL 480 QEMSRKSVSI VSRGFNQEAI KYNWRRKAAT YLPDHRSTVV SSILFRPLAN EHDIDSITIR 540 AMAWFSAAVS SGTPIVFVNI QTEQIISSDK GNSTRFPTHG VRLWFLPGIE EIPIELIPES 600 GENRFGIDIK RTDEGFVCLY AVTKDSAADR AGLRQLFKNA TETGHMVVLS RLEGKSVMPT 660 MVGSDGLLHC CDNGDIRETL VGAVDQLETI QLHIMSWPTT QSVSRTQLVG AETLRPPMS

Sequence ? help Back to Top

Protein Sequence Length: 719 aa Download sequence

MDETNAILPY NEPFEQRLQE YEHFLMHDEN DTEVPSTSQQ IDPPMGEDDP LVDNSFIFYN  60
DLFDEGLQTN TTPVNDETNV GSSELGNPIH LSSWPLQVPP YTCSCCQNLR EISHTNGVDI  120
TKLEIHGRLG VISHAVLEKY SVDLTTNQTH EYKMFDSINW NAVLYQLFGL YFVVPFVASF  180
CKESIVRVKE FLVEYCNERK TNGYIMLQDP LSSFYEAVCV GLDWEDNTVI DDLIPDLFPD  240
DSGEHQMIQI SDVETSGARS LNRSTLSIQR ERTEKLTMKD LTVYFHIPIE AAAKKINFCP  300
TVIKRVCRKH GLSRWPYRKI RSIEKKISMR ATYLTSVDVE KRDSIMKSNE MSYSQTLVCV  360
KQVKQEAVEE WDDSMPLPGD IIEGIAPVDS YTFEGVEDKL FVPTKGKSEL KSLLRSISKR  420
NADGFVWLKV RRGDQMVNMR VCAVQEKRFR LQRKFSFRAV SNEKHVAVLD DLDFDQCTEL  480
QEMSRKSVSI VSRGFNQEAI KYNWRRKAAT YLPDHRSTVV SSILFRPLAN EHDIDSITIR  540
AMAWFSAAVS SGTPIVFVNI QTEQIISSDK GNSTRFPTHG VRLWFLPGIE EIPIELIPES  600
GENRFGIDIK RTDEGFVCLY AVTKDSAADR AGLRQLFKNA TETGHMVVLS RLEGKSVMPT  660
MVGSDGLLHC CDNGDIRETL VGAVDQLETI QLHIMSWPTT QSVSRTQLVG AETLRPPMS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59580.1	1e-12	Nin-like family protein