PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc003162.1_g080.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

bHLH

Protein Properties

Length: 632aa MW: 70728.9 Da PI: 4.9649

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc003162.1_g080.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	47.5	3.2e-15	453	500	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++h ++ErrRR+++N++f Lr+l+P +K++Ka+iL ++eY+k+L+ Cse_sc003162.1_g080.1 453 TNHVMAERRRREKLNERFVILRSLVPLV-----TKMDKASILGDTIEYVKHLR 500 689**********************8.....8***************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 632 aa Download sequence
MAASGPPRGS LKEMLQSAAH SIQWTYSIFW QICPQQGVLV WGDGYYNGSI KTRKTVQSIE 60 VSTEEAALSR SEQLRELYDS LVAGDHLVTE NQQAATIRRP SMALSPEDLT ESEWFYLMCV 120 SFSFPPGVGL VGEAYTKQRH LWLTGANQVD SKVFTRAILA KTVLCIPLLN GVIELGTTDK 180 VEEAIELVQH VKLFFMTDND NPILIPPKPA LSAHSSNTNL SSNQMTTTIK PLDNTYSMVE 240 DDESEEDEED EEEYEEVEEE NVSGIVADTC HYSDFQKRSQ DKTGMDAIME ANELLPLDMS 300 EDIRFGSLND DPNHLDSHFN LLATSHDDSS RAESIPKWSD NLEFNEPTSI QLQVSGEFSQ 360 GEDTHYSHTV LTLLNNQQLI QRSNFHTPSR QNSIQSAFAM WTPNHHFPAK TTKTSQRILK 420 YMLCTVPYLH STVSPGDTST VGGAASRHDE VSTNHVMAER RRREKLNERF VILRSLVPLV 480 TKMDKASILG DTIEYVKHLR KKVAELEAQG RLPEKRKIRL VEGGGTVVEV SIIESDALVE 540 IECVHREGLL LDVMKKLREF GVEIMTVQSC VDGGICTAEM RAKANSEIAS LDLGKTSMNI 600 FYEDLSVKVK GIRGKKISIM QVKKAINQII SP

Sequence ? help Back to Top

Protein Sequence Length: 632 aa Download sequence

MAASGPPRGS LKEMLQSAAH SIQWTYSIFW QICPQQGVLV WGDGYYNGSI KTRKTVQSIE  60
VSTEEAALSR SEQLRELYDS LVAGDHLVTE NQQAATIRRP SMALSPEDLT ESEWFYLMCV  120
SFSFPPGVGL VGEAYTKQRH LWLTGANQVD SKVFTRAILA KTVLCIPLLN GVIELGTTDK  180
VEEAIELVQH VKLFFMTDND NPILIPPKPA LSAHSSNTNL SSNQMTTTIK PLDNTYSMVE  240
DDESEEDEED EEEYEEVEEE NVSGIVADTC HYSDFQKRSQ DKTGMDAIME ANELLPLDMS  300
EDIRFGSLND DPNHLDSHFN LLATSHDDSS RAESIPKWSD NLEFNEPTSI QLQVSGEFSQ  360
GEDTHYSHTV LTLLNNQQLI QRSNFHTPSR QNSIQSAFAM WTPNHHFPAK TTKTSQRILK  420
YMLCTVPYLH STVSPGDTST VGGAASRHDE VSTNHVMAER RRREKLNERF VILRSLVPLV  480
TKMDKASILG DTIEYVKHLR KKVAELEAQG RLPEKRKIRL VEGGGTVVEV SIIESDALVE  540
IECVHREGLL LDVMKKLREF GVEIMTVQSC VDGGICTAEM RAKANSEIAS LDLGKTSMNI  600
FYEDLSVKVK GIRGKKISIM QVKKAINQII SP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	459	464	ERRRRE
2	460	465	RRRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09820.1	6e-83	bHLH family protein