PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cse_sc003123.1_g010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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Family | LBD | ||||||||
Protein Properties | Length: 145aa MW: 16396.8 Da PI: 7.8231 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 125.8 | 2.1e-39 | 5 | 104 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +Ca+Ck+ rr+C+++Cv+apyfp+++p++f +vhk++Gasn+ k+++++p + r da++sl yeA++r++dPvyG++g+i+ l++q++ Cse_sc003123.1_g010.1 5 RCAVCKYFRRRCPSSCVFAPYFPNDNPQRFIFVHKIYGASNIAKMIEETPMHLRADAIDSLHYEAKCRIQDPVYGCAGIISLLHHQIQ 92 6*************************************************************************************** PP DUF260 89 qlkaelallkee 100 ++++la++++e Cse_sc003123.1_g010.1 93 VAQSQLAKAQAE 104 ********9987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 145 aa Download sequence |
MTPPRCAVCK YFRRRCPSSC VFAPYFPNDN PQRFIFVHKI YGASNIAKMI EETPMHLRAD 60 AIDSLHYEAK CRIQDPVYGC AGIISLLHHQ IQVAQSQLAK AQAEIAFLDA NFALDAPRPR 120 PGQSLLQLNN GVDYGLDDPV NPWFY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26660.1 | 2e-49 | LBD family protein |