PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc003060.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

Nin-like

Protein Properties

Length: 800aa MW: 90943 Da PI: 5.5191

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc003060.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	54.9	1.7e-17	587	633	2	48
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRk 48 e++isle+++k+F +pi +AA L v+ ++LKriCR++GI+ WP+R+ Cse_sc003060.1_g010.1 587 ESSISLEEIKKHFGKPIDEAAAILHVSRSTLKRICRNLGIQEWPSRQ 633 789*******************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 800 aa Download sequence
MKSGTKVFDA LKSRYPILSK PSSDAGRLDN DGRYLTKLWV FGIRELDDDH DPQHSLLPEK 60 SLGVKSQKKW ESAAIAEERD PQGQKENAEI DESQDGMNNK FVTRTFVGDL YHTTTKKQGN 120 LVCYITQQEE KQTLVCFGRI PREELKIEDF GISTLGKNSW TIMSPYAKRH PMIDLNTTDP 180 QKIQEKLIYA LSSLSFRGQH VLVQFWSPAT VRNRCVLTTW DQPFALGVVD DEGLYSYRMD 240 SEQCTFVVEG EHREELGPPA RVYSQKLPEW SFDIQTLPTR KSVQDLDASY NIHGYILLPV 300 FEPDSERCVG VLELVISSNY VDFAFEVEEV SRALKEENLK SPNVSEDPTF YIKTSNERRR 360 NELAEIFILL KTVCDTHKLP LAQTWSLSEC SSFVANSGNL EQMCSSFKKR CIGKICMSTG 420 DLPFYIRDMS RWEFHIASTE RHLEKSRGVV GRSLSSCGAW FCEDVTELNE DDYPLVPFAR 480 MSGLTSCLAI YIKTTQLAAE YVVELFLPTR ITNKADLQSL VKTMKQQNVF QLGIMSSIQE 540 IASVPFNWNI ESRPSLITCD SGAVGTSHGD VLYPEKVITH RKRRRSESSI SLEEIKKHFG 600 KPIDEAAAIL HVSRSTLKRI CRNLGIQEWP SRQDNDRSGG FEETSDLYRE AAKVDVLEDS 660 LLLRSPAVES KLKQIRKRLD RSNLPYGNGP DERSGTTNIS THGKHCTADD NWTIVATYRE 720 NAEIFLFRLS DGLEKLEEVV ATRFRLRLGS FNLKYVDEDD DMILIACDTD LMELAGDFRQ 780 SDNTVIKLLV LPVVHQSPDA

Sequence ? help Back to Top

Protein Sequence Length: 800 aa Download sequence

MKSGTKVFDA LKSRYPILSK PSSDAGRLDN DGRYLTKLWV FGIRELDDDH DPQHSLLPEK  60
SLGVKSQKKW ESAAIAEERD PQGQKENAEI DESQDGMNNK FVTRTFVGDL YHTTTKKQGN  120
LVCYITQQEE KQTLVCFGRI PREELKIEDF GISTLGKNSW TIMSPYAKRH PMIDLNTTDP  180
QKIQEKLIYA LSSLSFRGQH VLVQFWSPAT VRNRCVLTTW DQPFALGVVD DEGLYSYRMD  240
SEQCTFVVEG EHREELGPPA RVYSQKLPEW SFDIQTLPTR KSVQDLDASY NIHGYILLPV  300
FEPDSERCVG VLELVISSNY VDFAFEVEEV SRALKEENLK SPNVSEDPTF YIKTSNERRR  360
NELAEIFILL KTVCDTHKLP LAQTWSLSEC SSFVANSGNL EQMCSSFKKR CIGKICMSTG  420
DLPFYIRDMS RWEFHIASTE RHLEKSRGVV GRSLSSCGAW FCEDVTELNE DDYPLVPFAR  480
MSGLTSCLAI YIKTTQLAAE YVVELFLPTR ITNKADLQSL VKTMKQQNVF QLGIMSSIQE  540
IASVPFNWNI ESRPSLITCD SGAVGTSHGD VLYPEKVITH RKRRRSESSI SLEEIKKHFG  600
KPIDEAAAIL HVSRSTLKRI CRNLGIQEWP SRQDNDRSGG FEETSDLYRE AAKVDVLEDS  660
LLLRSPAVES KLKQIRKRLD RSNLPYGNGP DERSGTTNIS THGKHCTADD NWTIVATYRE  720
NAEIFLFRLS DGLEKLEEVV ATRFRLRLGS FNLKYVDEDD DMILIACDTD LMELAGDFRQ  780
SDNTVIKLLV LPVVHQSPDA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	581	585	RKRRR
2	581	586	RKRRRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	2e-85	Nin-like family protein