PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc003046.1_g080.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

Trihelix

Protein Properties

Length: 489aa MW: 57029.8 Da PI: 4.4974

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc003046.1_g080.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	36.7	1.1e-11	124	212	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrer.gferspkqCkekwenlnkrykkikegekkr..tsessstcpyfdql 85 +W+++ + +L+e+ ++ +l+r++l++ +W ev++k++e ++e++ qC+ ++e l+++ykk+k+ +++ + ++ +f+++ Cse_sc003046.1_g080.1 124 EWSENATFVLLEVWGDRYMQLGRRSLRGEDWVEVAEKISEMcKMEINDGQCRTRFETLKQKYKKEKAKMEGSgmGHGYYGKWGFFKKM 211 5***********************************775378*******************98776652335666789999998 PP trihelix 86 e 86 + Cse_sc003046.1_g080.1 212 D 212 7 PP

Sequence ? help Back to Top
Protein Sequence Length: 489 aa Download sequence
MDYNSSIRTR RPIRNNNYTN NNYNDYDNDN DFEQPESPLA PPINNRFNYH QHQHVNIVND 60 DSDNSADDDD DQDDINNNNN EYQQQYYNVG ETSTRRHQKK RRLENLVGGY GYAPRGNVSN 120 VMDEWSENAT FVLLEVWGDR YMQLGRRSLR GEDWVEVAEK ISEMCKMEIN DGQCRTRFET 180 LKQKYKKEKA KMEGSGMGHG YYGKWGFFKK MDMLLSPKRQ HNGLPCGVDS GEYVFMNTKV 240 YLNQSNALDE MRDSPGESEV DEDEDDDEED ENGDGLNEED EEGFKLLAES VQNFGEIYEK 300 IEGRKRQQML ELEKMRMDFQ RELELQKKVI LERAQAEIAK IREEDDEDAN SVENLSVSSS 360 CREGQLWIAI RYTTHSPKSS PPTLTLHYNT WPVLSNPCPV PQSTNQQYPQ KVVEAMTKAA 420 EVMKTKIEVS FRSSEQRSEF STLHEEWLKS VLAMSKVDDH KLEGGDEDDV FDELFCLWHE 480 LRCSNKKLM

Sequence ? help Back to Top

Protein Sequence Length: 489 aa Download sequence

MDYNSSIRTR RPIRNNNYTN NNYNDYDNDN DFEQPESPLA PPINNRFNYH QHQHVNIVND  60
DSDNSADDDD DQDDINNNNN EYQQQYYNVG ETSTRRHQKK RRLENLVGGY GYAPRGNVSN  120
VMDEWSENAT FVLLEVWGDR YMQLGRRSLR GEDWVEVAEK ISEMCKMEIN DGQCRTRFET  180
LKQKYKKEKA KMEGSGMGHG YYGKWGFFKK MDMLLSPKRQ HNGLPCGVDS GEYVFMNTKV  240
YLNQSNALDE MRDSPGESEV DEDEDDDEED ENGDGLNEED EEGFKLLAES VQNFGEIYEK  300
IEGRKRQQML ELEKMRMDFQ RELELQKKVI LERAQAEIAK IREEDDEDAN SVENLSVSSS  360
CREGQLWIAI RYTTHSPKSS PPTLTLHYNT WPVLSNPCPV PQSTNQQYPQ KVVEAMTKAA  420
EVMKTKIEVS FRSSEQRSEF STLHEEWLKS VLAMSKVDDH KLEGGDEDDV FDELFCLWHE  480
LRCSNKKLM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	6e-72	Trihelix family protein