PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc003006.1_g030.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

C2H2

Protein Properties

Length: 411aa MW: 44662.6 Da PI: 9.3232

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc003006.1_g030.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.6	2.2e-05	183	204	3	23
ETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 CpdCgksFsrksnLkrHirt.H 23 C+ Cg++F+ k++L++H+ + H Cse_sc003006.1_g030.1 183 CSECGEVFPKKESLEHHQAVrH 204 99****************9888 PP

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence
MAVLTLPPPE TTHKVQPTKR RRKHHSQNPK PKQQNPTTPP PSSWDQIKNL LKCKQMDVKN 60 NNPNGYSKLS SCSSICNFKD VANGHTTRVV HRADNSPESS IAGQDSSVLR RKKHVTNGVS 120 SSSSSSSATR SLTNGSVRSN NGHGSYTSAS RGMQFRKLSG CYECHAIVDP ARHAIPRSTI 180 CLCSECGEVF PKKESLEHHQ AVRHAVSELG PEDSGRNIVE IIFKSSWQNK NHPIFTIDRI 240 LKVNNTRRTI QRFEDCRETV KIQATLASTP TRCAADGNEL LRFHCTTVTC SLGLNSSSTL 300 CSSVPGCGVC TVIRHGFTGD GGRKGVCTTA SSGRAHDALV GVAPGVRAML VCRVIAGKVK 360 RVEGHAPPDE DGCYDSVCGF SGSYSGIEEL FVYNPRAILP CFVVIYKAME S

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence

MAVLTLPPPE TTHKVQPTKR RRKHHSQNPK PKQQNPTTPP PSSWDQIKNL LKCKQMDVKN  60
NNPNGYSKLS SCSSICNFKD VANGHTTRVV HRADNSPESS IAGQDSSVLR RKKHVTNGVS  120
SSSSSSSATR SLTNGSVRSN NGHGSYTSAS RGMQFRKLSG CYECHAIVDP ARHAIPRSTI  180
CLCSECGEVF PKKESLEHHQ AVRHAVSELG PEDSGRNIVE IIFKSSWQNK NHPIFTIDRI  240
LKVNNTRRTI QRFEDCRETV KIQATLASTP TRCAADGNEL LRFHCTTVTC SLGLNSSSTL  300
CSSVPGCGVC TVIRHGFTGD GGRKGVCTTA SSGRAHDALV GVAPGVRAML VCRVIAGKVK  360
RVEGHAPPDE DGCYDSVCGF SGSYSGIEEL FVYNPRAILP CFVVIYKAME S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	1e-130	C2H2 family protein