PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc002842.1_g060.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

bHLH

Protein Properties

Length: 944aa MW: 107549 Da PI: 5.8364

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc002842.1_g060.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.9	1.2e-05	70	89	10	29
HHHHHHHHHHHHHHHCTSCC CS HLH 10 rrRRdriNsafeeLrellPk 29 rrRR+++N+++eeL++l+ + Cse_sc002842.1_g060.1 70 RRRREEVNQKIEELKTLIQS 89 9*****************87 PP

Sequence ? help Back to Top
Protein Sequence Length: 944 aa Download sequence
MAHIWRAIME EHRANMQDYT NAHKETVRSE LRMAIVQQTM EMDIWEIKEK LAKRREQMAI 60 RAYQVEEDQR RRREEVNQKI EELKTLIQSF IRNPESEVKM PQAITKAPCY DDLAAREEKQ 120 VVEKTDFAGP ILAANKELGQ KLIDDDLDEP LMVLESDGKI NKNKFSIVPI KQSSTGKKNQ 180 AENHKMCVWQ IIKCKSGCEI CLRHLWANAR LKQEPVPAQR RTWDPGITQY EVFKQHLEDK 240 IKRCGEMARK LRYFKDQMSK AGLTPAAITD AQSDINLDDL EVKLEDLEAE LIEINANSEK 300 LQRGYNELVE YKLVLQKAGE FFRAAHRSAI AQQRESDSAP EESLETPLLT DQDPKTDQGK 360 QVKLGFLAGL VPKAKAIAFE RILFRATRGN VFLRQAPVDE AVIDPSSGEK VEKNVFLVFF 420 SGERAKSKVL KICEAFGANR YPFADDLSKQ EQTITGVSGR TSELKTTIDA GLLHRGNLLQ 480 IIGEKYARWN LLIQDALERA TTDSNSQVGA IFQVLNTKEL PPTYFRTNKF TDCFQTIIDA 540 YGVAKYQEAN PGGEEICQPG TLHLLLCPNL VKSADIVRLL KLEDFMEITF GGRYVILLMS 600 LFSIYTGLIY NEFFSVPFEL FSPSAYVCRD AACSEATTIG LIKERDTYPF GVDPAWHGSR 660 SELPFLNSLK MKMSILLGVA QMNLGIIMSF SNALYFKNAV NIWFQFIPQM IFLNGLFGYL 720 SVLIIVKWCT GSKADLYHVM IYMFLSPTDD LGENELFANQ KTVQLVLLLL SLIAVPWMLL 780 PKPFILKAQH NRTHQGQTYT PLEGEDNSLQ VEANHDSHDH EEFEFSEIFV HQLIHTIEFV 840 LGAVSNTASY LRLWALSLAH SELSTVFYEK VLLLAWGYNN VIILIIGIMV FISATVGVLL 900 LMETLSAFLH ALRLHWVEFQ SKFYEGDGYK FHPFSFALLG DEDE

Sequence ? help Back to Top

Protein Sequence Length: 944 aa Download sequence

MAHIWRAIME EHRANMQDYT NAHKETVRSE LRMAIVQQTM EMDIWEIKEK LAKRREQMAI  60
RAYQVEEDQR RRREEVNQKI EELKTLIQSF IRNPESEVKM PQAITKAPCY DDLAAREEKQ  120
VVEKTDFAGP ILAANKELGQ KLIDDDLDEP LMVLESDGKI NKNKFSIVPI KQSSTGKKNQ  180
AENHKMCVWQ IIKCKSGCEI CLRHLWANAR LKQEPVPAQR RTWDPGITQY EVFKQHLEDK  240
IKRCGEMARK LRYFKDQMSK AGLTPAAITD AQSDINLDDL EVKLEDLEAE LIEINANSEK  300
LQRGYNELVE YKLVLQKAGE FFRAAHRSAI AQQRESDSAP EESLETPLLT DQDPKTDQGK  360
QVKLGFLAGL VPKAKAIAFE RILFRATRGN VFLRQAPVDE AVIDPSSGEK VEKNVFLVFF  420
SGERAKSKVL KICEAFGANR YPFADDLSKQ EQTITGVSGR TSELKTTIDA GLLHRGNLLQ  480
IIGEKYARWN LLIQDALERA TTDSNSQVGA IFQVLNTKEL PPTYFRTNKF TDCFQTIIDA  540
YGVAKYQEAN PGGEEICQPG TLHLLLCPNL VKSADIVRLL KLEDFMEITF GGRYVILLMS  600
LFSIYTGLIY NEFFSVPFEL FSPSAYVCRD AACSEATTIG LIKERDTYPF GVDPAWHGSR  660
SELPFLNSLK MKMSILLGVA QMNLGIIMSF SNALYFKNAV NIWFQFIPQM IFLNGLFGYL  720
SVLIIVKWCT GSKADLYHVM IYMFLSPTDD LGENELFANQ KTVQLVLLLL SLIAVPWMLL  780
PKPFILKAQH NRTHQGQTYT PLEGEDNSLQ VEANHDSHDH EEFEFSEIFV HQLIHTIEFV  840
LGAVSNTASY LRLWALSLAH SELSTVFYEK VLLLAWGYNN VIILIIGIMV FISATVGVLL  900
LMETLSAFLH ALRLHWVEFQ SKFYEGDGYK FHPFSFALLG DEDE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	53	73	KRREQMAIRAYQVEEDQRRRR